Gene Information

Name : gacA (PputUW4_02386)
Accession : YP_007029389.1
Strain : Pseudomonas sp. UW4
Genome accession: NC_019670
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator GacA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2795651 - 2796292 bp
Length : 642 bp
Strand : +
Note : [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

DNA sequence : 
TTGATTAGGGTGCTAGTAGTCGATGACCATGATCTCGTTCGTACAGGCATTACACGAATGCTGGCTGACATCGATGGCCT
GCAAGTAGTCGGCCAGGCCGAGTCGGGTGAAGAATCCCTGCTCAAGGCGCGTGAGCTGAAACCCGATGTGGTGTTGATGG
ACGTCAAGATGCCGGGTATTGGCGGTCTTGAGGCCACTCGCAAATTATTGCGCAGTCATCCGGATATCAAGGTCGTCGCG
GTGACCGTGTGTGAAGAGGACCCGTTTCCTACGCGGCTGTTGCAAGCCGGTGCGGCAGGGTACCTGACCAAGGGGGCAGG
TTTGCCGGAAATGGTCCAGGCCATCCGCCTGGTGTTCGCCGGGCAACGCTACATCAGCCCGCAAATTGCCCAGCAACTGG
CGATCAAGTCCTTCCAGCCCACCAACGACTCGCCTTTCGATGCCCTGTCCGAGCGGGAAATCCAGATCGCGCTGATGATA
GTCGGCTGCCAGAAAGTACAGATCATTTCCGACAAATTGTGCCTGTCCCCGAAAACCGTGAACACCTACCGTTACCGCAT
CTTCGAAAAGCTTTCGATCAGCAGTGATGTCGAGTTGACGCTGTTGGCGGTGCGTCATGGCATGGTCGACGCCAGCCTCT
GA

Protein sequence : 
MIRVLVVDDHDLVRTGITRMLADIDGLQVVGQAESGEESLLKARELKPDVVLMDVKMPGIGGLEATRKLLRSHPDIKVVA
VTVCEEDPFPTRLLQAGAAGYLTKGAGLPEMVQAIRLVFAGQRYISPQIAQQLAIKSFQPTNDSPFDALSEREIQIALMI
VGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSISSDVELTLLAVRHGMVDASL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB0868_00306 YP_008211632.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR26 Protein 1e-52 58
BJAB07104_00302 YP_008207767.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR25 Protein 1e-52 58

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gacA YP_007029389.1 DNA-binding response regulator GacA VFG1889 Protein 5e-51 56