Gene Information

Name : PputUW4_01935 (PputUW4_01935)
Accession : YP_007028945.1
Strain : Pseudomonas sp. UW4
Genome accession: NC_019670
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2264881 - 2265564 bp
Length : 684 bp
Strand : -
Note : [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGACCCGCATCTTGACCATCGAAGACGACGCCGTGACCGCCCGGGAAATTGTCGCCGAACTGAGTAGCCACGGCCTCGA
CGTCGATTGGGTCGACAATGGCCGTGAAGGGCTGGAGCGGGCAGTCAGCGGCAACTATGACCTGATCACCCTCGACCGCA
TGTTGCCCGAACTCGATGGCCTGGCGATCGTCACCACGCTGCGGACCATGGGCGTGGCGACACCGATCCTGATGATCAGC
GCACTGTCCGACGTCGATGAACGCGTGCGCGGCTTGCGCGCCGGCGGCGACGACTACCTGACCAAACCCTTCGCCACCGA
TGAAATGGCCGCCCGGGTCGAAGTCCTGCTGCGCCGGCAGAACACCGTGACCGCCCAGGCGACCACGTTGCGGGTGGCGG
ATCTGGAGCTGAACCTGATCAGCCACGAAGCGAGCCGCGACGGTAAACTGCTGACGCTGTTGCCCACCGAGTACAAACTG
CTGGAATTCCTGATGCGCAATACCGGGCAGATCCTCTCGCGGATGATGATTTTCGAAGAAGTCTGGGGTTACCACTTCGA
CCCCGGCACCAACCTGATCGACGTACACATCGGCCGACTGCGCAAGAAAATCGACCCGCCTGGCAATGTCCCACTGATTC
GGACCGTGAGAGGCTCGGGTTATGTCATTGCCGAACCCGTCTAA

Protein sequence : 
MTRILTIEDDAVTAREIVAELSSHGLDVDWVDNGREGLERAVSGNYDLITLDRMLPELDGLAIVTTLRTMGVATPILMIS
ALSDVDERVRGLRAGGDDYLTKPFATDEMAARVEVLLRRQNTVTAQATTLRVADLELNLISHEASRDGKLLTLLPTEYKL
LEFLMRNTGQILSRMMIFEEVWGYHFDPGTNLIDVHIGRLRKKIDPPGNVPLIRTVRGSGYVIAEPV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-30 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputUW4_01935 YP_007028945.1 two component transcriptional regulator BAC0308 Protein 3e-37 45
PputUW4_01935 YP_007028945.1 two component transcriptional regulator BAC0111 Protein 5e-39 45
PputUW4_01935 YP_007028945.1 two component transcriptional regulator BAC0197 Protein 2e-37 45
PputUW4_01935 YP_007028945.1 two component transcriptional regulator BAC0347 Protein 1e-36 44
PputUW4_01935 YP_007028945.1 two component transcriptional regulator BAC0125 Protein 8e-36 43
PputUW4_01935 YP_007028945.1 two component transcriptional regulator BAC0083 Protein 3e-38 43
PputUW4_01935 YP_007028945.1 two component transcriptional regulator BAC0638 Protein 3e-34 42
PputUW4_01935 YP_007028945.1 two component transcriptional regulator HE999704.1.gene1528. Protein 3e-25 41
PputUW4_01935 YP_007028945.1 two component transcriptional regulator NC_012469.1.7686381. Protein 1e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PputUW4_01935 YP_007028945.1 two component transcriptional regulator VFG1389 Protein 4e-30 43
PputUW4_01935 YP_007028945.1 two component transcriptional regulator VFG1390 Protein 5e-34 42
PputUW4_01935 YP_007028945.1 two component transcriptional regulator VFG0596 Protein 2e-30 42