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Name : capD2 (PputUW4_01380) Accession : YP_007028391.1 Strain : Pseudomonas sp. UW4 Genome accession: NC_019670 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : - COG ID : - EC number : - Position : 1614644 - 1616638 bp Length : 1995 bp Strand : + Note : [MG] COG1086 Predicted nucleoside-diphosphate sugar epimerases DNA sequence : ATGGATAAGATTCGGGCAAAGTTGTTAAGTCTGCCAAGACGACATAAGCGCATTCTGCAGGTCCTGACTGATATTTCGCT GGTCTGGTGTGCCCTCTGGATGGCGTTTGTCGTGCGACTTGGGGTGGACGAGTTGATCAACCCGTTCACTCAGCACGTCT GGCTTTTTGTCAGTGCACCTGTCATCGCCATTCCTCTTTTCGTTCGCTTTGGCATGTACCGTGCGGTCATGCGGTACTTT GGAAATGACGCGCTCATTGCCATTATCAAGGCGGTGACACTATCGGCTCTGATACTTGGCGTCGTGGTGTACTGGTACAG CAATCATCAAAACGTCGTTCCGCGCTCGATCATTTTCAACTACTGGTGGTTGAGCCTGATCATGATCGGCGGTCTGCGCC TGGCCATGCGTCAGTACTTTATGGGCGACTGGTTCAGCGCCGCCCAGCACGTTCCGTTCACCAGCCGGGATGACGGACTG CCGAAAGTGGCCATCTACGGCGCAGGGGCGGCGGGTAATCAACTTGTTGCAGCGTTGCGGATGGGGCGCGTCATGCGCCC TGTAGCCTTTATCGATGACGATAGCGGGATCGCCGACCGAGTGATTTCCGGATTGCAGGTGTATAAGCCCAAGCACATCC AGCAGATGATCGATAACACCGGCGCCCAGGAAATTCTCCTTGCCATCCCTTCGTCAAACCGTGGCCGCCGTCGCGAGATT CTCGGGTTTCTCGAAGGCTTTCCGCTGCACGTTCGAAGCGTCCCGGGTTTCATGGATCTGGCCAGTGGCCGGGTCAAGGT AGACGATATCCAGGAAGTAGACATTGCCGACCTGCTCGGGCGTGACGCCGTCCCGGCCCAGGCTGATTTACTCGAACATT GCATCACGGGGCAGTCCGTGTTGGTCACGGGCGCCGGGGGCTCCATTGGCTCCGAGCTTTGCCGGCAGATTCTGGCACTG CGCCCCACAACGCTTCTCCTGTTTGAACACAGTGAGTTCAATCTTTACTCCATCTTGTCCGAGTTGGAGCAGCGGGTCGC TCGAGAATCGCTGTCCATTCGTCTCTTGCCGATTCTCGGATCGGTTCGCAACCCGGACAAGTTGCTGGACGTCATGAAAA CCTGGCGAGTAGACACGGTGTATCACGCCGCCGCCTACAAGCATGTGCCCATGGTCGAGCACAACATTGCCGAGGGTGTG CTCAATAATGTGATAGGCACGCTTAATACGGCCCAGGCCGCACTTCAGGCAGGAGTGGCCAACTTCGTCCTGATTTCGAC GGACAAGGCCGTGCGGCCTACCAATGTCATGGGTAGCACCAAGCGCCTTGCCGAGTTGACGTTGCAAGCGCTGAGTCGTG AGTTGGCTCCGGTTTTGTTCGGAGATACGAGCAATGTCTCCCGTGTGAACAAAACGCGCTTCACGATGGTGCGGTTTGGT AACGTCCTGGGGTCATCGGGTTCGGTCATTCCGCTGTTTCACAAGCAGATCAAGTCGGGTGGTCCTCTGACGGTCACGCA TCCGAAGATCACTCGATACTTCATGACAATCCCGGAAGCGGCGCAGCTGGTGATTCAAGCGGGTTCCATGGGGCAGGGGG GGGATGTTTTTGTCCTGGACATGGGCGAGCCCGTGAAAATCGTCGAACTGGCCGAGAAGATGATCCATTTGTCCGGCCTG AGTGTGCGCTCGGAAAAGAACCTGCATGGCGACATCGCTATCGAGTTCACCGGGCTGCGCCCGGGCGAAAAGCTTTACGA AGAGCTACTGATCGGTGACAACGTAGCAGCCACACAGCATCCGATGATCATGACGGCCAATGAGGATCACCTGTCCTGGG ATTTGCTGAAGGGCAAGTTGACCGAGTTGCTCGCAGCGGTGGATCAGGACGACTACACGCGCGTCCGCCAGTTGTTGCGC GACACTGTCAGCGGCTACACCCCGGACGGTGAGATTGTCGACTGGATCTACCAGCAGCGCCGCCTTGAGCCCTGA Protein sequence : MDKIRAKLLSLPRRHKRILQVLTDISLVWCALWMAFVVRLGVDELINPFTQHVWLFVSAPVIAIPLFVRFGMYRAVMRYF GNDALIAIIKAVTLSALILGVVVYWYSNHQNVVPRSIIFNYWWLSLIMIGGLRLAMRQYFMGDWFSAAQHVPFTSRDDGL PKVAIYGAGAAGNQLVAALRMGRVMRPVAFIDDDSGIADRVISGLQVYKPKHIQQMIDNTGAQEILLAIPSSNRGRRREI LGFLEGFPLHVRSVPGFMDLASGRVKVDDIQEVDIADLLGRDAVPAQADLLEHCITGQSVLVTGAGGSIGSELCRQILAL RPTTLLLFEHSEFNLYSILSELEQRVARESLSIRLLPILGSVRNPDKLLDVMKTWRVDTVYHAAAYKHVPMVEHNIAEGV LNNVIGTLNTAQAALQAGVANFVLISTDKAVRPTNVMGSTKRLAELTLQALSRELAPVLFGDTSNVSRVNKTRFTMVRFG NVLGSSGSVIPLFHKQIKSGGPLTVTHPKITRYFMTIPEAAQLVIQAGSMGQGGDVFVLDMGEPVKIVELAEKMIHLSGL SVRSEKNLHGDIAIEFTGLRPGEKLYEELLIGDNVAATQHPMIMTANEDHLSWDLLKGKLTELLAAVDQDDYTRVRQLLR DTVSGYTPDGEIVDWIYQQRRLEP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 8e-80 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| capD2 | YP_007028391.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 3e-122 | 46 |
| capD2 | YP_007028391.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 2e-78 | 42 |
