Gene Information

Name : Bdt_1589 (Bdt_1589)
Accession : YP_007022551.1
Strain : Bdellovibrio bacteriovorus Tiberius
Genome accession: NC_019567
Putative virulence/resistance : Virulence
Product : pili biogenesis protein PilB-like ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1681815 - 1683509 bp
Length : 1695 bp
Strand : -
Note : -

DNA sequence :
ATGGCCTCCGTGGATGTTTCAACGATACTTGCCAAATCGACCTCTTTAACACAGGACCAAATCCGTTCTGTGTTAAACAA
CCCTTCGGTGGTGAGACCCGTCACCGTCGGCGAGGCTTTGGCTGCGAAGGAATTTTCCACGGCGGATGAAGTGGTCTCCG
ATCTGTGCAAAGAACTGGGCCTGGATTTTATCCGGGACATCCCCGTCAGCGAGATCGCAGTCGACTTGATCCGGGACCTT
CCTATCAACTACGCAAAACAGCACAACGTCCTTCCCTACAAGGAAGACGCGGACCTGCTGGTGGTACTGACCAGTAATCC
GGTGAACCTCAAAGCCCTGGATGACATGAAGGTGCTGTTCGGAAAGCGCGTGCGCCCTCTGATCACCACCTCCAGCCGTG
TTCAGGATGCGATCAATAAAGTTTACGAAAAAAGCACCGCGAATCTTTCGGGTCTGGATGAAATCGCCGAAGAAGATTAC
GACCTGGATGATCCTATCGTGGATTTGCTTGAGGCCGGCGAAGATGACGCTCCGGTGATCAAGATGGTGAACAGCCTTCT
ATTCCGTGCGGTGAAAGAAAAAGCGTCTGATATCCACATCGAGCCTTATGAAAAAGACATGGCCGTGCGCTTCCGTACGG
ACGGTATTTTGTTCGACGTGTTCAAACCACCTAAAAAGCTTCAAAACGCCATCACGTCCCGTATCAAAGTTATGGCCAAT
CTGAACATCGCCGAAAAGCGTTTGCCCCAGGACGGTCGTATTCCTTTGAAAGTCGGTGGTAAAGATATCGATATTCGTCT
GTCTTGCGTCCCTACCACGTTCGGTGAGCGTCTGGTTATGCGTATTCAAGACAGGTCTTCTGTGGTGCGCGAACTGGCGG
CTTTGGGCTTCTCTCAGGATAATCTGTCCAAAATGGAAGAGGACATCCTGACCAGATCCTACGGGATCTTCCTGGTTACG
GGTCCGACGGGTTCTGGTAAGTCCACCACTTTGTATGGTGCCCTTTCCAAGCTGAATCAGCCTGACGTGAATATCCTGAC
AGTTGAAGATCCGGTGGAGCAACGTATCCACGGTATCGGTCAGGTGCAAGTGAACTCAAAGATCGGCCTGACTTTCGCAG
CCGGCCTTCGTTCCTTCCTTCGTCAAGACCCTGACATCATCATGGTCGGTGAGATTCGTGACTTGGAAACAGCCGAACTG
GCGATCCAGGCCTCTTTGACGGGTCACTTGGTTCTATCCACACTGCATACGAATGACTCCGCCGGGGCCTTCCCCCGTCT
GATCGACTTCGGGGTTGAGCCGTTCCTGATTGCAACTTCCATCACGGGTGTTATCGCCCAGCGTTTGGTGCGTGTTCTTT
GCCCGCACTGTAAAGCCCCGCATGAAGCCACGGATTTCGAAATTCAGCTGCTGGGTATCACTCGCGAAGAAGCCAACAAG
GCCAATATCTGCAAAGCAATGGGTTGCAACCACTGCTCGCAGAAAGGTTATTCCGGTCGTACCAATATTGGAGAGTTGAT
GATCGTAACGGATGACATCCGCTCATTGATCATGCAGCGTAAAGACGGTAATACAATTAAAAGACAAGCAGTTGCCAACG
GAATGAGGACCTTCCGTGACCACGGGATTCAAAAAGTCCTTGCGGGTATCACGACAATTGAAGAACTGACCTCCAATACG
CAACTGGATATTTAA

Protein sequence :
MASVDVSTILAKSTSLTQDQIRSVLNNPSVVRPVTVGEALAAKEFSTADEVVSDLCKELGLDFIRDIPVSEIAVDLIRDL
PINYAKQHNVLPYKEDADLLVVLTSNPVNLKALDDMKVLFGKRVRPLITTSSRVQDAINKVYEKSTANLSGLDEIAEEDY
DLDDPIVDLLEAGEDDAPVIKMVNSLLFRAVKEKASDIHIEPYEKDMAVRFRTDGILFDVFKPPKKLQNAITSRIKVMAN
LNIAEKRLPQDGRIPLKVGGKDIDIRLSCVPTTFGERLVMRIQDRSSVVRELAALGFSQDNLSKMEEDILTRSYGIFLVT
GPTGSGKSTTLYGALSKLNQPDVNILTVEDPVEQRIHGIGQVQVNSKIGLTFAAGLRSFLRQDPDIIMVGEIRDLETAEL
AIQASLTGHLVLSTLHTNDSAGAFPRLIDFGVEPFLIATSITGVIAQRLVRVLCPHCKAPHEATDFEIQLLGITREEANK
ANICKAMGCNHCSQKGYSGRTNIGELMIVTDDIRSLIMQRKDGNTIKRQAVANGMRTFRDHGIQKVLAGITTIEELTSNT
QLDI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspE YP_854406.1 type II secretion protein GspE Not tested PAI I APEC-O1 Protein 1e-103 45
gspE CAE85233.1 GspE, hypothetical type II secretion protein Not tested PAI V 536 Protein 9e-104 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bdt_1589 YP_007022551.1 pili biogenesis protein PilB-like ATPase VFG0182 Protein 9e-102 49
Bdt_1589 YP_007022551.1 pili biogenesis protein PilB-like ATPase VFG2048 Protein 1e-105 46
Bdt_1589 YP_007022551.1 pili biogenesis protein PilB-like ATPase VFG1876 Protein 1e-97 44
Bdt_1589 YP_007022551.1 pili biogenesis protein PilB-like ATPase VFG0112 Protein 1e-91 44
Bdt_1589 YP_007022551.1 pili biogenesis protein PilB-like ATPase VFG1880 Protein 4e-89 43