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Name : HPAKL117_01315 (HPAKL117_01315) Accession : YP_007016815.1 Strain : Helicobacter pylori Aklavik117 Genome accession: NC_019560 Putative virulence/resistance : Virulence Product : ATP-dependent protease binding subunit (clpB) Function : - COG functional category : - COG ID : - EC number : - Position : 264056 - 266626 bp Length : 2571 bp Strand : + Note : COG0542 ATPases with chaperone activity, ATP-binding subunit DNA sequence : ATGAATTTATTTGAAAAAATGACTGACCAATTGCATGAAACTTTAGACAGCGCGCTCGCTCTAGCCTTACACCATAAAAA CGCTGAAGTAACGCCCTTGCACATGCTTTTTGTCATGCTCAATAACTCCCAAGGCATCCTCATTCAAGCCTTACAAAAAA TGTCTGTGGATATTCAAGCCTTAAGGCTTAGCGTTCAAAGCGAGTTGAATAAGTTTGCTAAAGTTTCACAAATCAACAAG CAAAATATCCAATTAAACCAAGCTCTAATCCAAAGTTTAGAAAACGCTCAAGGCTTGATGGCTAAAATGGGCGATTCTTT CATCGCTACAGATGTGTATCTTTTGGCGAACATGAGCCTTTTTGAAAGCGTTCTAAAACCTTATTTAGACACTAAAGAAT TGCAAAAAACTTTAGAGGCTTTGAGAAAAGGCGCGACTATCCAAAGTAAAAACGATGATTCTAATTTGGAAAGTTTGGAA AAATTTGGCATTGATTTGACGCAAAAAGCCCTAGAAAATAAGCTCGATCCGGTGATCGGGAGGGATGAAGAAATCATTCG CATGATGCAAATTTTGATAAGAAAAACAAAAAATAACCCTATTTTACTGGGTGAGCCTGGAGTGGGGAAAACGGCGGTTG TGGAGGGTTTGGCCCAACGCATTGTGAATAAGGAAGTGCCTAAAACGCTTTTAAACAAACGAGTCGTCGCTTTAGATTTA AGCTTGTTGGTGGCTGGAGCCAAATACAGAGGCGAGTTTGAAGAGCGTTTGAAAAAGGTGATTGAAGAAGTTAAAAAAAG CGCGAATGTGATTTTATTCATTGATGAAATCCACACGATCGTAGGGGCTGGAGCTAGTGAGGGGGGCATGGATGTGGCTA ATATTTTAAAACCCGCGCTCGCTAGGGGGGAATTGCACACGATTGGAGCGACCACTTTGAAAGAATACCGCAAGTATTTT GAAAAAGACATGGCACTACAAAGGCGTTTCCAACCCATTTTACTCAATGAGCCTAGCATCAATGAAGCCTTACAGATTTT AAGGGGGTTAAAAGAAACTTTAGAAACGCACCATAATATCACTATCAACGACTCCGCGCTCATAGCGAGCGCCAAACTCT CTAGCCGTTATATCACCGATAGGTTTTTACCCGATAAAGCGATTGATTTGATTGATGAGGGGGCGGCCCAATTAAAAATG CAAATGGAATCTGAGCCGGCAAAACTCTCTAGCGTTAAACGCTCCATTCAAAGATTAGAAATGGAAAGACAAGCCCTTGA AATGGAAAAAAAAGAGAGCAATGCCAAACGCATGCAAGAAATCCTTAAAGAATTGAGCGACTTGAAAGAAGAAAAAATCC AATTAGAAGCGCAATTTGAAAACGAAAAAGAAGTGTTTAGAGAAATTTCACGCTTGAAAATGGAAACGGAAAGCTTGAAA AAAGAGGCTGAGAGGTTTAAGCGCAATGGGGATTACCAGCAAGCGGGTGAAATTGAATACTCTAAAATCCCTGAAAACAA AAAGAAAGAAGAAGAATTGCAGCATAAATGGGAAGCGATGCAACAAAACGGGGCGTTATTGCAAAACGCTTTAACCGAAA ACAACATCGCTGAGATCGTGAGCCAATGGACGCATATACCGGTCCAAAAAATGCTCCAAAGCGAAAAAAATAGGGTTTTA AACATTGAAAGCGAATTGCAAAAAAGAGTGGTGGGGCAAGAAAAAGCGATCAAAGCGATCGCTAAAGCGATTAAAAGGAA TAAGGCCGGGCTTAGCGATAGCAATAAACCCATAGGGAGTTTTCTTTTTTTAGGGCCAACGGGCGTGGGTAAAACCGAGA GCGCTAAAGCTTTGGCGCAATTCTTGTTTGATAGCGATAAAAATCTTATAAGAATTGACATGAGCGAATACTTAGAAAAG CATGCCATAAGCCGTCTTATTGGGGCCGCTCCTGGGTATGTGGGCTATGAAGAAGGCGGGCAATTGACCGAAGCGGTGCG CAGAAAACCCTATAGCGTGGTGCTGTTAGATGAAGTGGAAAAAGCCCATCCGGATGTGTTTAACCTTTTGTTGCAGGTTT TAGATGAAGGGCATTTAACCGATAGTAAGGGCGTGAGGGTGGATTTCAAAAACACGATTTTGATTTTAACCAGCAATGTG GCTAGTGGTGTGCTTTTAGAAGAGATTTTGAGTGAAGCCGATAAACAAAAAGCGATCAAAGAGAGTTTGAGGCAATTCTT CAAGCCGGAATTTTTAAACCGCTTAGATGAAATCATCTCCTTTAACGCCCTAGATAGCCATGCTATCGCTAATATCGTGG GGATTCTCTTTGAAAACATTCAAAAAAAAGCGCTTGAAAGAGGTATTAATATAACCCTAGACGAAGAGGCAAAAGAATTG ATCGCCAAAGCGGGATTTGACAGATTCTATGGTGCTAGACCCTTGAAGCGCGCGCTCTATGAAATGGTAGAAGACAAGCT CGCTGAACTCATTTTAGAGGATAAAATTAAAGAGAATGACAGCGTGGCGTTTGTGGTAGAAAATAACGAAATTGTGCCTA AGATTAAGTGA Protein sequence : MNLFEKMTDQLHETLDSALALALHHKNAEVTPLHMLFVMLNNSQGILIQALQKMSVDIQALRLSVQSELNKFAKVSQINK QNIQLNQALIQSLENAQGLMAKMGDSFIATDVYLLANMSLFESVLKPYLDTKELQKTLEALRKGATIQSKNDDSNLESLE KFGIDLTQKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIVNKEVPKTLLNKRVVALDL SLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGASEGGMDVANILKPALARGELHTIGATTLKEYRKYF EKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKM QMESEPAKLSSVKRSIQRLEMERQALEMEKKESNAKRMQEILKELSDLKEEKIQLEAQFENEKEVFREISRLKMETESLK KEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQHKWEAMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVL NIESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYLEK HAISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNV ASGVLLEEILSEADKQKAIKESLRQFFKPEFLNRLDEIISFNALDSHAIANIVGILFENIQKKALERGINITLDEEAKEL IAKAGFDRFYGARPLKRALYEMVEDKLAELILEDKIKENDSVAFVVENNEIVPKIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 1e-140 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HPAKL117_01315 | YP_007016815.1 | ATP-dependent protease binding subunit (clpB) | VFG0079 | Protein | 1e-158 | 43 |
| HPAKL117_01315 | YP_007016815.1 | ATP-dependent protease binding subunit (clpB) | VFG2076 | Protein | 2e-112 | 42 |
