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Name : HPAKL117_07110 (HPAKL117_07110) Accession : YP_007017942.1 Strain : Helicobacter pylori Aklavik117 Genome accession: NC_019560 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.11 Position : 1463436 - 1464683 bp Length : 1248 bp Strand : - Note : COG0172 Seryl-tRNA synthetase DNA sequence : ATGATTGATAAAAAACTTTTATTGCAAGATTTTGAGATGGTGGCTCTTTCTTTAAAAAAGCGTAATAATGCGATGGATGA TGAGTTGGAGCGTTTGCGCGAAGTCATCACGCATTATAAAAAGCAGCTCATTGAATTAGAAAGCTTGCAAGCCTTTCAAA ACAAGGTTTCTAAAGAATTTGGTATCAAAATGGCTCAAAAAGTGGATACAAGCGATCTCAAAAAAGAGCTAGAAAACAAC AAAATCAAACTGAATGAGCTTTCCAAAAGCGTGGGCGAATTGGAACAACAAATAGATTTAAAGCTTTCAATAATCCCTAA TTTAGTGGATGAAAAAACCCCTTTAGGCGCAAGCGAAGAAGACAACATAGAGATTAAAAAAATCTTAACCCCTAGAAATT TCACTTTCAAACCCAAAGAGCATTTTGAACTCGCTCAACAAAATGGCTGGATTGATTTTGAAAGCGGCGTGAAGCTCGCC AAAAGCCGTTTTTCTGTCATTAGGGGTTTTGGGGCTAAAATTTATCGTGCGCTCATCCATTTAATGTTGGATTTTAATGA AAAAAATGGCTTTGAAATCATCTACACGCCGGCGTTAGTGAATGAAAAAATGCTTTTTGGGACCGGGCAATTACCCAAAT TCAAAGAAGATGTTTTCAAAATAGAAAATGAAAATTTGTATCTGATCCCCACCGCTGAAGTAACGCTCACTAATCTATAC AACGACACGATTGTTAGCGTTGAAAAACTCCCTATTAAAATGACCGCGCACACGCCTTGTTTTAGGAGCGAAGCAGGGAG TGCGGGCAAGGACACAAGAGGGATGATAAGACAACACCAGTTTGATAAAGTAGAGCTAGTGGCCATCACGCACCCTAAAG AAAGCGATGTTATGCAAGAGCATATGCTAGAGAGCGCCAGCGAAATTTTAAAGGCTTTGGAATTACCGCACCGGTTCGTG CAATTGTGCAGCGCGGATTTAGGCTTTAGCGCAAGCAACACGATAGATATTGAAGTGTGGCTACCCGGGCAAAATTGCTA CCGAGAAATCAGCTCCGTGTCTAACACGAGGGATTTTCAAGCCAGGCGCGCGAAAATCCGCTTCAAAGAAAATCAAAAAA ACCAGTTAGCGCACACCTTAAACGGCTCTTCTTTAGCGGTAGGCAGGACGATGGTCGCTTTAATGGAAAACCACCAGCAA GCGGATGGGAGTATCCATATTCCTAAGGCGTTAGAAAAATACCTTTAA Protein sequence : MIDKKLLLQDFEMVALSLKKRNNAMDDELERLREVITHYKKQLIELESLQAFQNKVSKEFGIKMAQKVDTSDLKKELENN KIKLNELSKSVGELEQQIDLKLSIIPNLVDEKTPLGASEEDNIEIKKILTPRNFTFKPKEHFELAQQNGWIDFESGVKLA KSRFSVIRGFGAKIYRALIHLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLPKFKEDVFKIENENLYLIPTAEVTLTNLY NDTIVSVEKLPIKMTAHTPCFRSEAGSAGKDTRGMIRQHQFDKVELVAITHPKESDVMQEHMLESASEILKALELPHRFV QLCSADLGFSASNTIDIEVWLPGQNCYREISSVSNTRDFQARRAKIRFKENQKNQLAHTLNGSSLAVGRTMVALMENHQQ ADGSIHIPKALEKYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 3e-77 | 45 |
