Gene Information

Name : ybdM (BN389_13330)
Accession : YP_007014898.1
Strain : Listeria monocytogenes LL195
Genome accession: NC_019556
Putative virulence/resistance : Virulence
Product : Uncharacterized protein ybdM
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1315613 - 1316119 bp
Length : 507 bp
Strand : -
Note : -

DNA sequence :
ATGAATTACAAGAGCCCAGTATATAGCGTTACTCCCATTCACTACACAAAATTACAAGCAAATAATTATAATCCCAACAC
TGTCCCCGCAACCGAACTCAAACTACTTGAAAAATCAATTTGGGAAGATGGGTTTACGCAACCAATTGTTTGTTATCCCT
TGGAAGACAGCGATAAATATGAAATAATAGATGGGTTCCACCGTTACACTATCATGAGAACCTCTAAACGAATTCGAGAA
CGAGAAAATGAATTCTTACCAGTAGTCATCTTAGAAAAGGACACCGTGAATCGAATGGCCTCTACAATACGTCATAATCG
TGCGCGCGGATTTCATAATGTCGAATTAATGTCCAACATTGTTAGTGAACTTGTAGATAGCGGGATGTCCGATAGTTGGA
TTATGAAAAATATTGGAATGGATGCTAATGAAATCTTACGCTTAAAACAAGTGAGCGGACTTGCTCACCTCTTCTTAGAT
AAAGAATTCAGTCACACATCTGATTAA

Protein sequence :
MNYKSPVYSVTPIHYTKLQANNYNPNTVPATELKLLEKSIWEDGFTQPIVCYPLEDSDKYEIIDGFHRYTIMRTSKRIRE
RENEFLPVVILEKDTVNRMASTIRHNRARGFHNVELMSNIVSELVDSGMSDSWIMKNIGMDANEILRLKQVSGLAHLFLD
KEFSHTSD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
M5005_Spy_0164 YP_281528.1 parB-like nuclease Not tested Not named Protein 8e-41 56
ef0120 AAM75321.1 EF0120 Not tested Not named Protein 3e-32 50
EF0607 NP_814365.1 ParB-like nuclease domain-containing protein Not tested Not named Protein 4e-32 50
Z1644 NP_287147.1 hypothetical protein Not tested TAI Protein 1e-23 46
Z1204 NP_286739.1 hypothetical protein Not tested TAI Protein 1e-23 46
STY4584 NP_458668.1 conserved hypothetical protein Not tested SPI-7 Protein 5e-25 45
t4278 NP_807876.2 hypothetical protein Not tested SPI-7 Protein 5e-25 45
Z1644 AAQ19140.1 putative ParB-like nuclease Not tested PAI I CL3 Protein 5e-24 44
ibrB ADD91736.1 predicted transcriptional regulator IbrB Not tested PAI-I AL862 Protein 5e-24 44
z1204 CAD33764.1 Z1204 protein Not tested PAI I 536 Protein 3e-24 43
ORF_30 AAZ04440.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 2e-14 42
APECO1_3503 YP_854305.1 hypothetical protein Not tested PAI I APEC-O1 Protein 3e-14 42
c5208 NP_757056.1 hypothetical protein Not tested PAI II CFT073 Protein 3e-14 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ybdM YP_007014898.1 Uncharacterized protein ybdM VFG1505 Protein 1e-24 43