Gene Information

Name : llrC (uc509_0421)
Accession : YP_006998911.1
Strain : Lactococcus lactis UC509.9
Genome accession: NC_019435
Putative virulence/resistance : Virulence
Product : two-component system regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 418046 - 418747 bp
Length : 702 bp
Strand : -
Note : -

DNA sequence :
ATGAAAAAAATTCTTGTTGTTGATGATGAAAAACCAATCTCAGATATCGTAAAATTTAATTTAACCAAAGAAGGTTTTGA
AGTATTTACAGCTTTCGATGGCGAAGAAGCCCTTGAAGCTTTTAAAGAAGTACAACCTGACCTTATTTTACTTGATTTGA
TGTTACCAAAACTTGACGGTCTTGATGTTGCACGTGAAATCCGTAAAACCTCTGACACTCCTATTATCATGGTGTCAGCT
AAAGATAGCGAGTTTGATAAAGTTATTGGACTTGAACTTGGTGCAGATGACTATGTCACTAAACCATTTTCAAATCGCGA
ACTTTTAGCTCGTATTAAAGCAAACTTGCGTCGTATCAATGTCGCACCTGCTGAATCTACTGATAATGTTAAGAAAGAAT
TGATTATCGGAAATCTCCGTATCAATCCAGCACATTATGCTGCTTACAAAAATGATAAACAACTTGACCTCACACACCGT
GAGTTTGAATTACTTTATTATCTTGCTCAACACCTCGGCGAAGTTATCACTCGTGAAAATCTTTTGGAAACAGTTTGGGG
CTATGATTACTTTGGTGATGTGCGTACAGTTGACGTTACAGTCCACCGCTTGCGTGAAAAAGTTGAAGATACACCAAGCC
GTCCACAATACGTTTCAACACGCCGCGGGGTTGGCTATTACATGAGCAACCCACATGATTAA

Protein sequence :
MKKILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDGLDVAREIRKTSDTPIIMVSA
KDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRINVAPAESTDNVKKELIIGNLRINPAHYAAYKNDKQLDLTHR
EFELLYYLAQHLGEVITRENLLETVWGYDYFGDVRTVDVTVHRLREKVEDTPSRPQYVSTRRGVGYYMSNPHD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 9e-29 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 3e-28 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
llrC YP_006998911.1 two-component system regulator NC_012469.1.7685629. Protein 2e-70 73
llrC YP_006998911.1 two-component system regulator HE999704.1.gene2815. Protein 1e-46 53
llrC YP_006998911.1 two-component system regulator NC_003923.1003749.p0 Protein 2e-51 52
llrC YP_006998911.1 two-component system regulator NC_002952.2859905.p0 Protein 2e-51 51
llrC YP_006998911.1 two-component system regulator NC_009782.5559369.p0 Protein 2e-51 51
llrC YP_006998911.1 two-component system regulator NC_002951.3237708.p0 Protein 2e-51 51
llrC YP_006998911.1 two-component system regulator NC_002758.1121668.p0 Protein 2e-51 51
llrC YP_006998911.1 two-component system regulator NC_007622.3794472.p0 Protein 2e-51 51
llrC YP_006998911.1 two-component system regulator NC_009641.5332272.p0 Protein 2e-51 51
llrC YP_006998911.1 two-component system regulator NC_013450.8614421.p0 Protein 2e-51 51
llrC YP_006998911.1 two-component system regulator NC_007793.3914279.p0 Protein 2e-51 51
llrC YP_006998911.1 two-component system regulator NC_002745.1124361.p0 Protein 2e-51 51
llrC YP_006998911.1 two-component system regulator NC_012469.1.7686381. Protein 2e-42 51
llrC YP_006998911.1 two-component system regulator AE016830.1.gene1681. Protein 1e-42 48
llrC YP_006998911.1 two-component system regulator AE000516.2.gene3505. Protein 5e-31 46
llrC YP_006998911.1 two-component system regulator NC_014475.1.orf0.gen Protein 2e-35 44
llrC YP_006998911.1 two-component system regulator NC_005054.2598277.p0 Protein 2e-35 44
llrC YP_006998911.1 two-component system regulator CP004022.1.gene3215. Protein 1e-32 43
llrC YP_006998911.1 two-component system regulator HE999704.1.gene1528. Protein 2e-25 42
llrC YP_006998911.1 two-component system regulator CP001138.1.gene4273. Protein 3e-33 42
llrC YP_006998911.1 two-component system regulator CP001918.1.gene5135. Protein 1e-28 42
llrC YP_006998911.1 two-component system regulator AF162694.1.orf4.gene Protein 2e-30 42
llrC YP_006998911.1 two-component system regulator FJ349556.1.orf0.gene Protein 1e-33 42
llrC YP_006998911.1 two-component system regulator NC_002695.1.915041.p Protein 1e-32 41
llrC YP_006998911.1 two-component system regulator BAC0533 Protein 2e-33 41
llrC YP_006998911.1 two-component system regulator CP000034.1.gene3834. Protein 1e-32 41
llrC YP_006998911.1 two-component system regulator CP000647.1.gene4257. Protein 2e-33 41
llrC YP_006998911.1 two-component system regulator AM180355.1.gene1830. Protein 3e-32 41
llrC YP_006998911.1 two-component system regulator AF155139.2.orf0.gene Protein 4e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
llrC YP_006998911.1 two-component system regulator VFG1389 Protein 6e-27 44
llrC YP_006998911.1 two-component system regulator VFG1563 Protein 5e-29 42
llrC YP_006998911.1 two-component system regulator VFG1702 Protein 1e-28 42