Gene Information

Name : yycF (BN424_67)
Accession : YP_006990865.2
Strain : Carnobacterium maltaromaticum LMA28
Genome accession: NC_019425
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein yycF
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 71392 - 72099 bp
Length : 708 bp
Strand : +
Note : [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGAAAAAAATATTAGTCGTAGACGATGAAAAACCAATCTCAGACATTGTGAAATTTAACTTAACTAAAGAAGGTTACGA
AGTAAGTACAGCATATGATGGCGAAGAAGCCTTAAAAATGGTTCCAGAAGTAGAACCGGATTTAATTATATTAGATTTAA
TGTTACCGAAAATTGATGGCTTAGAAGTTTGCCGCGAGGTTCGTAAAAATTATGACATGCCGATTATTATGGTGACTGCT
AAAGATTCTGAAATCGATAAGGTTTTAGGCTTAGAATTAGGAGCTGATGATTATGTCACGAAACCTTTTTCAAATCGTGA
ATTAGTAGCCCGTGTAAAAGCTAATTTAAGGCGTCATGGAAATGCTGCAACACCAGTTGTTGAAGAAGATGACAATAATG
AAATTGAAGTTGGAGCTTTGACAGTCCATCCAGATGCTTATATTGTCTCAAAACGAGGCGAAAAGATTGAATTAACGCAT
CGTGAATTTGAATTGCTACATTATTTGGCGAGACACTTAGGTCAAGTTATGACCCGTGAGCATTTGCTACAAACAGTTTG
GGGTTATGATTATTTTGGAGATGTTAGAACAGTTGATGTAACCGTTCGTCGTTTAAGAGAAAAAATAGAAGACAACCCAA
GTCATCCTGGTTGGTTAGTGACTAGACGTGGTGTTGGGTATTATTTGAGAAATCCTGAACAGGAGTAA

Protein sequence : 
MKKILVVDDEKPISDIVKFNLTKEGYEVSTAYDGEEALKMVPEVEPDLIILDLMLPKIDGLEVCREVRKNYDMPIIMVTA
KDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRHGNAATPVVEEDDNNEIEVGALTVHPDAYIVSKRGEKIELTH
REFELLHYLARHLGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPGWLVTRRGVGYYLRNPEQE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 5e-33 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_012469.1.7685629. Protein 9e-65 69
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_002951.3237708.p0 Protein 1e-49 54
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_002952.2859905.p0 Protein 2e-49 54
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_007622.3794472.p0 Protein 8e-50 54
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_002745.1124361.p0 Protein 1e-49 54
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_009641.5332272.p0 Protein 1e-49 54
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_013450.8614421.p0 Protein 1e-49 54
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_007793.3914279.p0 Protein 1e-49 54
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_002758.1121668.p0 Protein 1e-49 54
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_003923.1003749.p0 Protein 1e-49 54
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_009782.5559369.p0 Protein 1e-49 54
yycF YP_006990865.2 transcriptional regulatory protein yycF HE999704.1.gene2815. Protein 1e-43 51
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_012469.1.7686381. Protein 1e-39 48
yycF YP_006990865.2 transcriptional regulatory protein yycF AE016830.1.gene1681. Protein 4e-43 46
yycF YP_006990865.2 transcriptional regulatory protein yycF FJ349556.1.orf0.gene Protein 1e-36 46
yycF YP_006990865.2 transcriptional regulatory protein yycF HE999704.1.gene1528. Protein 5e-30 45
yycF YP_006990865.2 transcriptional regulatory protein yycF AF155139.2.orf0.gene Protein 1e-34 45
yycF YP_006990865.2 transcriptional regulatory protein yycF AE000516.2.gene3505. Protein 5e-35 45
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_013450.8614146.p0 Protein 2e-36 45
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_002951.3238224.p0 Protein 2e-36 45
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_007793.3914065.p0 Protein 2e-36 45
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_002758.1121390.p0 Protein 2e-36 45
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_010079.5776364.p0 Protein 2e-36 45
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_002952.2859858.p0 Protein 2e-36 45
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_007622.3794948.p0 Protein 2e-36 45
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_003923.1003417.p0 Protein 2e-36 45
yycF YP_006990865.2 transcriptional regulatory protein yycF CP000034.1.gene3834. Protein 1e-30 43
yycF YP_006990865.2 transcriptional regulatory protein yycF BAC0533 Protein 5e-31 43
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_002695.1.915041.p Protein 1e-30 43
yycF YP_006990865.2 transcriptional regulatory protein yycF CP000647.1.gene4257. Protein 5e-31 43
yycF YP_006990865.2 transcriptional regulatory protein yycF CP004022.1.gene3215. Protein 5e-36 43
yycF YP_006990865.2 transcriptional regulatory protein yycF CP001918.1.gene5135. Protein 2e-26 43
yycF YP_006990865.2 transcriptional regulatory protein yycF AM180355.1.gene1830. Protein 9e-36 43
yycF YP_006990865.2 transcriptional regulatory protein yycF BAC0039 Protein 1e-30 43
yycF YP_006990865.2 transcriptional regulatory protein yycF NC_002695.1.916589.p Protein 1e-30 43
yycF YP_006990865.2 transcriptional regulatory protein yycF CP001918.1.gene3444. Protein 9e-30 43
yycF YP_006990865.2 transcriptional regulatory protein yycF CP000034.1.gene2186. Protein 1e-30 43
yycF YP_006990865.2 transcriptional regulatory protein yycF CP001138.1.gene4273. Protein 1e-30 42
yycF YP_006990865.2 transcriptional regulatory protein yycF AF162694.1.orf4.gene Protein 2e-31 42
yycF YP_006990865.2 transcriptional regulatory protein yycF AF130997.1.orf0.gene Protein 2e-34 42
yycF YP_006990865.2 transcriptional regulatory protein yycF EU250284.1.orf4.gene Protein 5e-34 42
yycF YP_006990865.2 transcriptional regulatory protein yycF DQ212986.1.gene4.p01 Protein 3e-35 42
yycF YP_006990865.2 transcriptional regulatory protein yycF AE015929.1.gene1106. Protein 1e-30 42
yycF YP_006990865.2 transcriptional regulatory protein yycF CP001138.1.gene2239. Protein 8e-29 42
yycF YP_006990865.2 transcriptional regulatory protein yycF CP000647.1.gene2531. Protein 3e-29 42
yycF YP_006990865.2 transcriptional regulatory protein yycF BAC0596 Protein 8e-29 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yycF YP_006990865.2 transcriptional regulatory protein yycF VFG1389 Protein 2e-29 45
yycF YP_006990865.2 transcriptional regulatory protein yycF VFG1563 Protein 3e-33 41
yycF YP_006990865.2 transcriptional regulatory protein yycF VFG1702 Protein 6e-33 41
yycF YP_006990865.2 transcriptional regulatory protein yycF VFG1386 Protein 1e-29 41