Gene Information

Name : irr (BN424_3503)
Accession : YP_006994428.1
Strain : Carnobacterium maltaromaticum LMA28
Genome accession: NC_019425
Putative virulence/resistance : Resistance
Product : response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3487554 - 3488225 bp
Length : 672 bp
Strand : -
Note : [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGCAGAAAAGAATTTTGGTAGTCGAAGATGATGAGATGACGAATAAAGTCATTACTAATTTTTTAGCTGAACAAAATTT
TACTGTTTTCTCAGCGCTAGATGGGCAAGCAGGTTGGGATATTTTCCAAAAGGAAACTCTAGATTTAATTATCTTAGACA
TTATGCTTCCCAAAATCGATGGTTTAGCGTTGCTGGCTCAATTTAGAGAAGTTTCTCAAATTCCAATTATTATGCTAACC
GCACTAGATGATGAATACACACAGGTAGTTAGTTATAGTAATCTAATTGACGATTACGTGACCAAGCCTTTTTCGCCTAC
GATTTTGGTTAAACGAGTTGAAGCGGTGCTCCGTAGAAACGTGCAAGAGGAAGAAAATAGCGGGAAAATTAAATACGGTG
AGTTAACAATTGACTTAGATGCTTGCACTGTTGAAAATCAATCTGAAGCAGTTAATTTAACAAAAAAAGAATACGATATT
GTTACACAATTAATTAGCCGTAAAGGCAAAGTTGTGACGCGTGAGCAATTGATGGATCAAATTTGGGGCTATGACTATAA
CCCTAGTGACCGGATTATTGATACCCATATAAAAAATATTCGTAAAAAATTACCCGGTATTGAAATCAGAACTGTCAAAG
GAACTGGCTATGCAATCGAGGCAGAGCTATGA

Protein sequence : 
MQKRILVVEDDEMTNKVITNFLAEQNFTVFSALDGQAGWDIFQKETLDLIILDIMLPKIDGLALLAQFREVSQIPIIMLT
ALDDEYTQVVSYSNLIDDYVTKPFSPTILVKRVEAVLRRNVQEEENSGKIKYGELTIDLDACTVENQSEAVNLTKKEYDI
VTQLISRKGKVVTREQLMDQIWGYDYNPSDRIIDTHIKNIRKKLPGIEIRTVKGTGYAIEAEL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
vanRB YP_008394254.1 DNA-binding response regulator VanRB Not tested Not named Protein 1e-40 42
vanRB NP_815956.1 DNA-binding response regulator VanRB Not tested Not named Protein 3e-40 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
irr YP_006994428.1 response regulator AF310956.2.orf0.gene Protein 5e-41 42
irr YP_006994428.1 response regulator HE999704.1.gene1202. Protein 4e-42 42
irr YP_006994428.1 response regulator U35369.1.gene1.p01 Protein 1e-40 41
irr YP_006994428.1 response regulator AE016830.1.gene2255. Protein 1e-40 41