Gene Information

Name : copB (BN424_2333)
Accession : YP_006993088.2
Strain : Carnobacterium maltaromaticum LMA28
Genome accession: NC_019425
Putative virulence/resistance : Resistance
Product : copper-translocating P-type ATPase
Function : -
COG functional category : -
COG ID : -
EC number : 3.6.3.4
Position : 2336894 - 2338684 bp
Length : 1791 bp
Strand : +
Note : [P] COG2217 Cation transport ATPase

DNA sequence : 
ATGCCTTTTTTAAAAGGGGCTAAAATGGAGCTTGAAGCTAAAAGCCCAGCAATGATGACCTTAATTTCATTAGGTATTTC
AGTGGCTTACATTTATAGCGTGTATGCTTTTATTGCAAATAATATTTTAACAAATAAAGTTCATGTAATGGATTTTTTTT
GGGAACTAGCAACGTTGATTCTTATCATGTTACTTGGGCATTGGATTGAAATGAATGCTATAAGCAACGCTGGAAATGCA
TTACAAAAAATGGCAGAATTATTACCAGGGACAGCAAGCGTGCTTGATGCCACTGGAAATACAAAAGAAGTTGCTTTACA
AGATGTCAATGTTGGAGATAAAGTGATGGTAAAAGCTGGTGAGAAAATCCCAACTGACGGAGTACTCATTTCTGGAAAAA
CAACCGTCAATGAATCAATGGTAACTGGTGAAGCAAAAGACGTTACCAAAAATATAAATGACAAAGTTATTGGTGGTTCA
GTGAATGGTTCTGGAACAATTACTATAAAAGTTACCGGAACAGGTGAATCAGGATATTTATCTCAAGTAATGGCTTTAGT
AAGTAGTGCGCAACAAGAAAAATCAAGTGTCGAATCGCTATCTGATAAGGTAGCCAAACTCCTATTTTACGTTGCTTTAA
TTGTTGGGATTTTATCTTTTACAACCTGGATACTCCTAACTGGTGATGTGAATATTGCTTTAGAGCGAATGGTTACTGTC
CTGATTATTGCATGTCCACATGCACTTGGACTGGCTATTCCATTAGTAACAGCACGTTCCACCTCGCTTGGAGCTCAAAA
TGGATTACTAATTAAGAATAGACAAGCCTTAGAAGTAGCTAAAAAGGTTGATGTTATTATGATGGACAAAACAGGCACTC
TTACTGAAGGTAACTTTTCAGTATCTACTTATAAATCATTTTCAGATGACTATACGGATACTGAAATTCTTGAATATATG
GGTTCTTTAGAAAAAAACTCGAGTCATCCACTTTCAATTGGTGTTTTGAAAAAACTTAAAGAACTAAACTTAAATACACC
CCTGGCTACCGACATTACAACAATTGCAGGTACAGGAATTGAAGGAACAATTTTAACTAAAGATGTCAAAATTGTAAGTG
TTGCTTATTTAAATAGACATGCCCTAGATTATGATAAAAAACTCTTTTCCGACCTTTCGAGTAAAGGAAACTCTGTTAGT
TTTCTTTTAGTTGAAAATAAGAATGTTGGGATAGTTGCGCAGGGTGATCAAATTAAACCAGAAGCTAAATCTATGATTGA
AGCATTAAAAAAACAAGGTATTAAACCAGTGATGTTAACTGGAGATAATAGACAAGCGGCAGCTGTGGTTGCTAATCATT
TAGGCATCGAGGATGTCCATGCGGAACTCCTTCCGGAAGACAAAGAAAAAATCGTCAGAGAATATAAAAATAAAGGTCTA
ATCGTCATGATGGTCGGGGATGGTGTTAATGATGCTCCTAGTTTAGTAAGAGCAGATATTGGCGTAGCTATTGGTGCTGG
AACAGATGTAGCTATTGATTCTGCAGATGTGATTCTTGTAAAAAGTAACCCATCTGACATTCTCCATTTTTTAACCCTTG
CAAAAAATACTTCAAGAAAAATGATACAAAACTTATGGTGGGGATCAGGTTATAACATTGTTGCAATACCTTTAGCTGCC
GGGGTACTTTCCTTCGCAGGTATCATTCTTAGTCCTGCAATTGGCGCTATATTCATGTCGTTTAGTACAGTCATTGTAGC
AATAAATGCTATGTTATTAAAGATAAAATAG

Protein sequence : 
MPFLKGAKMELEAKSPAMMTLISLGISVAYIYSVYAFIANNILTNKVHVMDFFWELATLILIMLLGHWIEMNAISNAGNA
LQKMAELLPGTASVLDATGNTKEVALQDVNVGDKVMVKAGEKIPTDGVLISGKTTVNESMVTGEAKDVTKNINDKVIGGS
VNGSGTITIKVTGTGESGYLSQVMALVSSAQQEKSSVESLSDKVAKLLFYVALIVGILSFTTWILLTGDVNIALERMVTV
LIIACPHALGLAIPLVTARSTSLGAQNGLLIKNRQALEVAKKVDVIMMDKTGTLTEGNFSVSTYKSFSDDYTDTEILEYM
GSLEKNSSHPLSIGVLKKLKELNLNTPLATDITTIAGTGIEGTILTKDVKIVSVAYLNRHALDYDKKLFSDLSSKGNSVS
FLLVENKNVGIVAQGDQIKPEAKSMIEALKKQGIKPVMLTGDNRQAAAVVANHLGIEDVHAELLPEDKEKIVREYKNKGL
IVMMVGDGVNDAPSLVRADIGVAIGAGTDVAIDSADVILVKSNPSDILHFLTLAKNTSRKMIQNLWWGSGYNIVAIPLAA
GVLSFAGIILSPAIGAIFMSFSTVIVAINAMLLKIK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH0105 YP_252020.1 hypothetical protein Not tested SCCmec Protein 3e-150 62

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copB YP_006993088.2 copper-translocating P-type ATPase BAC0079 Protein 4e-171 61
copB YP_006993088.2 copper-translocating P-type ATPase BAC0383 Protein 1e-124 49
copB YP_006993088.2 copper-translocating P-type ATPase BAC0629 Protein 1e-117 47