Gene Information

Name : hol (BN424_2123)
Accession : YP_006992879.2
Strain : Carnobacterium maltaromaticum LMA28
Genome accession: NC_019425
Putative virulence/resistance : Virulence
Product : holin, phage phi LC3 family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2147960 - 2148220 bp
Length : 261 bp
Strand : -
Note : [S] COG5546 Small integral membrane protein

DNA sequence :
TTGAAAGTGAATTGGAAGGTGCGTTTTAAATCGAAAGCTTTTTGGGTAGCGATTGTGCCAGCATTTTTATTGTTAATTCA
ATTGTTGTTAAAACCTTTAGGTATTAATTTAGATATTAATTTTTTAGGTGGTTACTTCTTAGATGTAGTAAATGCAATAT
TTGTATTACTGACAATTCTAGGTGTTGTGAATGATCCAACTGTATTTGGTTTTAAAGACAGTGAACAAGCGTTAAATTAT
GAAGAACCTAAAAAAGACTAG

Protein sequence :
MKVNWKVRFKSKAFWVAIVPAFLLLIQLLLKPLGINLDINFLGGYFLDVVNAIFVLLTILGVVNDPTVFGFKDSEQALNY
EEPKKD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAUSA300_1924 YP_494575.1 holin Virulence ¥ÕSa3 Protein 2e-07 46
SAUSA300_1924 YP_494575.1 holin Virulence ¥ÕSa3 Protein 2e-07 46
SAKOR_01925 YP_008492113.1 Holin Virulence ¥ÕSa3 Protein 2e-07 46
MW1887 NP_646704.1 hypothetical protein Not tested ¥ÕSa3 Protein 2e-07 46
SAV1946 NP_372470.1 holin-like protein Not tested ¥ÕSa3 Protein 2e-07 46
SA1760 NP_375055.1 hypothetical protein Not tested ¥ÕSa3 Protein 2e-07 46
SAOV_1911 YP_005737356.1 phage-associated holin Not tested ¥ÕSa3 Protein 0.001 45