Gene Information

Name : csrR (BN424_2118)
Accession : YP_006992874.2
Strain : Carnobacterium maltaromaticum LMA28
Genome accession: NC_019425
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2144882 - 2145568 bp
Length : 687 bp
Strand : -
Note : [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGAATAGAATTTTAATTATTGAAGATGAAAAGAATTTAGCTCGTTTTGTTGAGTTAGAATTAAAACATGAAGGATACGA
AACTGAAGTGCAAAATAATGGTCGTAAAGGATTGGAAACAGCCCTTGATTCTGATTGGGATGCGATTTTATTAGATTTAA
TGTTACCTGAATTGAATGGTATAGAAGTTTGTCGTCGTATCCGTCAAGTGAAGAACACTCCGATAATCATGATGACAGCA
CGAGATTCAGTTATTGATCGCGTTTCTGGTTTAGATCATGGAGCAGATGATTACATTGTTAAACCATTTGCTATTGAAGA
GTTATTAGCTCGTTTACGTGCACTTTTACGACGTATTGATATCGAAGGTGAACAAAATGTGACAAAACAAACAACAGTAA
CGTATCGTGATTTGACGATTGAAAAGGAAAATCGCGTTGTTCGTCGTGGAGATAAAGTGATTGAATTAACTAAACGAGAA
TATGAATTATTATTAGCTTTAATGGAAAATATTAATGTCGTTTTAGCTCGTGATGTTTTATTAAATAAAGTTTGGGGTTA
CGAAACAGAAGTTGAAACGAATGTTGTTGATGTTTATATTCGTTATCTACGTAATAAAATTGATGTTCCAGAAGAGGAAA
GTTACATTCAAACCGTTCGAGGAACAGGTTATGTGATGCGTTCGTGA

Protein sequence : 
MNRILIIEDEKNLARFVELELKHEGYETEVQNNGRKGLETALDSDWDAILLDLMLPELNGIEVCRRIRQVKNTPIIMMTA
RDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDIEGEQNVTKQTTVTYRDLTIEKENRVVRRGDKVIELTKRE
YELLLALMENINVVLARDVLLNKVWGYETEVETNVVDVYIRYLRNKIDVPEEESYIQTVRGTGYVMRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-29 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 9e-29 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
csrR YP_006992874.2 response regulator HE999704.1.gene1528. Protein 2e-79 74
csrR YP_006992874.2 response regulator NC_002758.1121390.p0 Protein 2e-47 54
csrR YP_006992874.2 response regulator NC_010079.5776364.p0 Protein 2e-47 54
csrR YP_006992874.2 response regulator NC_002952.2859858.p0 Protein 2e-47 54
csrR YP_006992874.2 response regulator NC_007622.3794948.p0 Protein 2e-47 54
csrR YP_006992874.2 response regulator NC_003923.1003417.p0 Protein 2e-47 54
csrR YP_006992874.2 response regulator NC_013450.8614146.p0 Protein 2e-47 54
csrR YP_006992874.2 response regulator NC_002951.3238224.p0 Protein 2e-47 54
csrR YP_006992874.2 response regulator NC_007793.3914065.p0 Protein 2e-47 54
csrR YP_006992874.2 response regulator AE015929.1.gene1106. Protein 8e-44 53
csrR YP_006992874.2 response regulator BAC0125 Protein 9e-31 44
csrR YP_006992874.2 response regulator BAC0308 Protein 2e-31 43
csrR YP_006992874.2 response regulator NC_012469.1.7685629. Protein 2e-35 41
csrR YP_006992874.2 response regulator BAC0197 Protein 1e-26 41
csrR YP_006992874.2 response regulator HE999704.1.gene2815. Protein 6e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
csrR YP_006992874.2 response regulator VFG0596 Protein 1e-29 43
csrR YP_006992874.2 response regulator VFG1390 Protein 6e-37 43
csrR YP_006992874.2 response regulator VFG1389 Protein 3e-32 42
csrR YP_006992874.2 response regulator VFG1702 Protein 4e-31 41