Gene Information

Name : PACID_32180 (PACID_32180)
Accession : YP_006982333.1
Strain : Propionibacterium acidipropionici ATCC 4875
Genome accession: NC_019395
Putative virulence/resistance : Virulence
Product : Transcriptional regulatory protein, C-terminal domain-containing protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3418842 - 3419540 bp
Length : 699 bp
Strand : +
Note : -

DNA sequence :
ATGCACATCCTTGTGGTGGACGACGACCGGGCCGTGCGCGAATCCCTCGCGCGCTCGCTGCACTACAGCGGCTATGAGGT
CGACACCGCCGAGGACGGGGTGGTGGCACTCGCGAAGCTGAGTTCCATGCGCCCCGACGCCGTCATCATGGACGTCATGA
TGCCCCGGCTCGACGGCCTGGAGGCCACCCGGATGCTGCGCTCCACCGGCAACGACGTCCCGATCCTGGTGCTCACCGCC
CGCGACGCCGTCGGCGACCGGGTCGACGGCCTGGATGCCGGTGCCGATGACTACATGGTCAAGCCCTTCGCCCTCGACGA
GCTGCTCGCCAGGCTGCGGGCCCTGACCCGCCGCTCCCGCGCCGAGTCCGAGCCGGAGTCCCTGGAGGACGCCGAGGTGC
TCACTTTCGCCGACCTCACCCTCGACCCGCAGACCCGCGAGGTGAGCCGGGGAGGACGCCGGATCAGCCTGACCCGCACC
GAGTTCGCCCTCCTGCAGGTCTTCCTCCAGAACCCCCGCAAGGTGCTGGAGCGCTCCTGGCTGCTGCACGAGGTGTGGGG
ATTCGACTTCCCCACCACGGCGAACTCGCTGGAGGTCTACATCGGCTACCTGCGCCGAAAGACCGAGAATGACGGCGAGC
CCCGCCTCATCCACACGGTGCGCGGCGTCGGCTACGTGTTGCGGGAAGCGACTTCGTGA

Protein sequence :
MHILVVDDDRAVRESLARSLHYSGYEVDTAEDGVVALAKLSSMRPDAVIMDVMMPRLDGLEATRMLRSTGNDVPILVLTA
RDAVGDRVDGLDAGADDYMVKPFALDELLARLRALTRRSRAESEPESLEDAEVLTFADLTLDPQTREVSRGGRRISLTRT
EFALLQVFLQNPRKVLERSWLLHEVWGFDFPTTANSLEVYIGYLRRKTENDGEPRLIHTVRGVGYVLREATS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-27 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein BAC0125 Protein 3e-30 43
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein BAC0638 Protein 4e-25 43
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein BAC0308 Protein 1e-30 43
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein BAC0111 Protein 6e-34 43
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein AE000516.2.gene3505. Protein 1e-32 43
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein BAC0083 Protein 1e-32 42
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein HE999704.1.gene1528. Protein 6e-33 41
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein BAC0197 Protein 2e-27 41
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein NC_002952.2859905.p0 Protein 4e-30 41
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein NC_007622.3794472.p0 Protein 3e-30 41
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein NC_002745.1124361.p0 Protein 3e-30 41
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein NC_009782.5559369.p0 Protein 3e-30 41
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein NC_002951.3237708.p0 Protein 3e-30 41
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein NC_003923.1003749.p0 Protein 4e-30 41
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein NC_002758.1121668.p0 Protein 3e-30 41
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein NC_009641.5332272.p0 Protein 3e-30 41
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein NC_013450.8614421.p0 Protein 3e-30 41
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein NC_007793.3914279.p0 Protein 3e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein VFG1390 Protein 1e-69 70
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein VFG1389 Protein 2e-41 50
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein VFG1386 Protein 5e-42 49
PACID_32180 YP_006982333.1 Transcriptional regulatory protein, C-terminal domain-containing protein VFG0596 Protein 1e-27 41