Gene Information

Name : amad1_21258 (amad1_21258)
Accession : YP_006979044.1
Strain :
Genome accession: NC_019394
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 104215 - 105096 bp
Length : 882 bp
Strand : +
Note : COG2801 Transposase and inactivated derivatives

DNA sequence :
GTGAAATACGCGTTTATCGCCGAGCGAAAGAATACCTATCCTGTTGATCGGTTGTGCCGGTTACTAGGCGTAAAGCGCAA
TGGGTTTTATAGATATATGAAAACTCAACATCAACCTACAACGGATGATGACAAGCGAAAAGAAATAGTAGAATGGATGC
ACAAGATTGCCAAAGCCAGTGAGCATAGTTATGGCAGTCGACGGATGCAAAAAGCACTGAATTGTTTGGGCTATCCTATT
GGTAGGCGTCTTACACGCCGACTGATGAAAGAAGCAGGCGTGCAAGTTCGCTACAAGAAAAAATATAAGGTCACGACAAA
CAGCAACCACACGTTACCAATATTTGACAATGTGCTCGACAGACAATTTGATGTTGATGCACCCAATCTAGCTTATGTGC
AGGATATTACTTATATCTGGACACAAGAAGGCTGGTTATATTTGGCCGTTGTTATTGATCTTTACTCAAGGAAAGTCGTT
GGCTGGAGTATGGGTTCAAGAATGAAAGCTAAATTAGTATGTGATGCGCTAACGATGGCGATATGGCAGCGGAATCCAAA
AGCCGGATTGGTTGTCCATTCAGATCGCGGCAGCCAATATGCGAGTGCAGACTATCGGCGCTTGCTTAAAGGACACCAAT
TTGTTGGCAGTATGAGTCGAAAAGGTGATTGTTGGGATAATAGTGTTGTTGAGAGTTTCTTCGGTAGCTTGAAGCAAGAA
CTGGTGCATTGGAAGCAATACCAAACTCGTTATGAAGCACAGCAGGATATGCTGCGATACATCACAACATTTTATAATCC
TGAACGGTTGCATTCGTATCTAGATTACAGAAGTCCAAATCAATATGAGGCGGACATGAAGAAATTGAAAAAAGTAGCTT
AA

Protein sequence :
MKYAFIAERKNTYPVDRLCRLLGVKRNGFYRYMKTQHQPTTDDDKRKEIVEWMHKIAKASEHSYGSRRMQKALNCLGYPI
GRRLTRRLMKEAGVQVRYKKKYKVTTNSNHTLPIFDNVLDRQFDVDAPNLAYVQDITYIWTQEGWLYLAVVIDLYSRKVV
GWSMGSRMKAKLVCDALTMAIWQRNPKAGLVVHSDRGSQYASADYRRLLKGHQFVGSMSRKGDCWDNSVVESFFGSLKQE
LVHWKQYQTRYEAQQDMLRYITTFYNPERLHSYLDYRSPNQYEADMKKLKKVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 8e-41 43
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 9e-41 43
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 7e-41 43
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 8e-41 43
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 4e-33 43
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 4e-33 43
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 2e-48 42
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-48 42
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-48 42
unnamed AAF09022.1 unknown Not tested SHI-O Protein 4e-41 42
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 3e-40 42
unnamed AAF09030.1 unknown Not tested SHI-O Protein 8e-41 42
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 8e-41 42
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 8e-41 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
amad1_21258 YP_006979044.1 hypothetical protein VFG1706 Protein 4e-41 43
amad1_21258 YP_006979044.1 hypothetical protein VFG1484 Protein 2e-33 43