Gene Information

Name : amad1_05825 (amad1_05825)
Accession : YP_006976038.1
Strain : Alteromonas macleodii AltDE1
Genome accession: NC_019393
Putative virulence/resistance : Virulence
Product : N-6 DNA methylase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1288158 - 1290587 bp
Length : 2430 bp
Strand : +
Note : COG0286 Type I restriction-modification system methyltransferase subunit

DNA sequence :
ATGGATCATAGTGTACATAACAAGCTCATCTCATTTATTTGGAACATTGCCGACGACTGTTTACGTGATGTGTACGTTCG
CGGTAAGTACCGCGATGTGATTTTACCTATGGTGGTATTACGACGTTTAGATACGTTACTAGAACCTACCAAAGAAGCCG
TGCTTGAAGAGGTAAAGTTCCAAAAAGAAGAGATGCAAGCCACGGAGCTTGATGATGAACCATTAAAAGCGGCCAGTGGT
TATGTTTTTTACAATACATCTAAATGGACGCTGAAATCCCTGTTCAACACCGCAACGAATAACCAACAGATATTACTCGC
CAACTTTGAAGAGTACCTGCTTGGCTTTAGCGATAACGTTAAAGAAATCATTGAATGCTTTAATCTCAAATCGCAAATTC
GTCACATGGCCTCCAAGCAAGTCCTTCTTGATGTCGTCGAAAAGTTTGTTTCCCCTTACATCAACCTAACTCATGAAACG
GTCGAAGACCCAGATGGCAACAAGATGCCAGCCCTTACTAACCTGGGTATGGGTTACGTGTTCGAGGAGTTGATCCGCAA
GTTCAACGAAGAAAACAACGAAGAAGCAGGTGAACACTTTACACCACGTGAAGTGATTGAATTGATGACGCACCTGGTGT
TCGACCCAGTGAAAGACCAGTTGCCGCTTACCATGACAGTGTATGACCCTGCGTGTGGTAGCGGTGGTATGTTGACTGAA
TCTCAAAACTTCATTGAAGAGAAATACCCGAACGACAGCCGTGATGTTTACCTTTACGGCAAAGAGATCAACGACGAAAC
CTACGCGATTTGTAAATCGGACATGATGATCAAAGGTAACAACCCTGAGAACATCAAAGTAGGCTCAACCTTGTCTACCG
ATGAGTTCGCGGCTTCACGCTTTGACTTTATGTTGTCTAACCCGCCATATGGTAAGAGTTGGGCGTCTGAACAGAAGCAC
ATTAAAGACGGCAGTGATGTGATTGACCCTCGTTTTAAGGTTAGCCTGAAAGACTATTGGGGAAATCTCGAAGTGGTAGA
TGCCACGCCACGTTCAAGTGATGGCCAGCTGCTCTTCTTAATGGAAATGGTCAACAAGATGAAAGATCCGAGTGTAAGCC
CATTAGGCAGCCGGATTGCTTCTGTTCATAACGGCTCATCGCTCTTTACCGGTGATGCGGGCGGTGGCGAAAGTAACATT
CGTCGCTTCATCATTGAAAACGACATGCTAGATGCCATCGTTCAGTTACCTAATAACCTGTTCTACAACACCGGCATTAC
CACTTACATTTGGGTGTTGAACAACAATAAACCTGAGGCACGTAAAGGTAAGGTGCAACTGATTGATGCCAGCTTGCTAT
ACCGTAAGTTGCGTAAGAACTTAGGTAACAAAAACTGCGAATTTGCACCTGAGCACATTACGGAAATTACCGATACTTAC
CTGGCGTGTATGGATGTTGAAAGAGCACTTGATGCAAACAATGATCCGATCGGCATCGCCAGCAAGGTGTTTAGCAATGA
CGATTTTGGCTACTACAAAGTCACTATCGAGCGCCCAGATCGCCGCAGAGCCAAGTTCACTCAAGACGCAATAGCCCCAC
TGCGTTTTGATAAGCAGCTCAGTGAAGTGATGGAGCACGTTTACGCAGAGCACGGCGAACGTGTTTACGAAAAAACTGGC
TACGGGTCTGATCAGAAAAAGAGCTTCTTAAAATCCATTGAGAAGGACATTCTTTCTTGGTGTGAAGATAACGACATCAG
TCTCAATGCAAAGGCTAAGGCAAAACTGCTCGATGTGAAACATTGGCTGGCGCTAAAAGCATTGCTTGAAACGGCACAAA
CGCTGATGGCTGATATCGGTAGCAATGAATTTGATGACTTCAATAGCTTTAAAACCCAAGTTGATAAATCACTAAAAGCC
CACGCCATTAAGCTTTCAGCACCTGAGAAAAATGCCATCCTAAACGCGGTGAGCTGGTATGACGAAACCGCCAAGAAAGT
GGTTAAAAAGGTAGTTAAATTAACGGGTGATAAATTAGACGACCTCCTGGAGCGCTACGAGTGTGAAGTCGCTGACCTGC
CAGATTTTGGTTATTACCCCGTTCCTAGAGAAGAAGGCGGTAAAAAGGGCGAGTTCATCACTTACGAAACCAACTCAGAC
CTGCGAGACACAGAATCTGTCCCGCTGAAGCAAAGCATTTACCAGTACTTCCTAGACGAAGTGAAGCCACATGTTGATGA
AGCGTGGATAAACCTGGATACGGTGAAAATTGGTTATGAAATCAGCTTCAATAAGTATTTCTACCGTCATAAACCGCTGC
GTAGTTTAGAAGAGGTGGCAACCGACATCATCAACCTGGAACAAAAAGCCGAAGGTCTTATTGCGCAGATATTGGGTGTG
AACGTGGCGGAAGTTCAGGGAGAAGCGTAA

Protein sequence :
MDHSVHNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEMQATELDDEPLKAASG
YVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIECFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHET
VEDPDGNKMPALTNLGMGYVFEELIRKFNEENNEEAGEHFTPREVIELMTHLVFDPVKDQLPLTMTVYDPACGSGGMLTE
SQNFIEEKYPNDSRDVYLYGKEINDETYAICKSDMMIKGNNPENIKVGSTLSTDEFAASRFDFMLSNPPYGKSWASEQKH
IKDGSDVIDPRFKVSLKDYWGNLEVVDATPRSSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNI
RRFIIENDMLDAIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPEHITEITDTY
LACMDVERALDANNDPIGIASKVFSNDDFGYYKVTIERPDRRRAKFTQDAIAPLRFDKQLSEVMEHVYAEHGERVYEKTG
YGSDQKKSFLKSIEKDILSWCEDNDISLNAKAKAKLLDVKHWLALKALLETAQTLMADIGSNEFDDFNSFKTQVDKSLKA
HAIKLSAPEKNAILNAVSWYDETAKKVVKKVVKLTGDKLDDLLERYECEVADLPDFGYYPVPREEGGKKGEFITYETNSD
LRDTESVPLKQSIYQYFLDEVKPHVDEAWINLDTVKIGYEISFNKYFYRHKPLRSLEEVATDIINLEQKAEGLIAQILGV
NVAEVQGEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1769 NP_231404.1 DNA methylase HsdM Not tested VPI-2 Protein 0.0 78
VC0395_A1367 YP_001217310.1 DNA methylase HsdM Not tested VPI-2 Protein 0.0 78
VPI2_0017c ACA01834.1 DNA methylase HsdM Not tested VPI-2 Protein 0.0 78

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
amad1_05825 YP_006976038.1 N-6 DNA methylase VFG1102 Protein 0.0 78