|
Name : lysS (C694_00905) Accession : YP_006934105.1 Strain : Helicobacter pylori 26695 Genome accession: NC_018939 Putative virulence/resistance : Virulence Product : lysyl-tRNA ligase Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 188683 - 190188 bp Length : 1506 bp Strand : + Note : COG1190 Lysyl-tRNA synthetase (class II) DNA sequence : ATGTTTTCTAACCAATACATCCAACAACGCATCCATAAAGCCAATAGCTTGAGAGAAGAAGGGAAAAACCCTTATCAAAA TGGCTTGAAACGAAGCCTTACAAACGCCGCTTTTTTAGAAAAATACGCTTATGTTAAGGGTTTAGAAGAGCCTAAAGACA AAGAAAAATGCGAGAGTATTGTAGGGAGGGTCAAGCTTTTGCGTTTAATGGGTAAGGCATGTTTTATTAAAGTTGAAGAT GAAAGCACGATTTTGCAAGTTTATGTTTCGCAAAATGAATTGAATGATGAGTTTAAAAGCTTGAAAAAGCATTTAGAAGT GGGCGATATTGTGTTGGTGAAAGGCTTCCCTTTTGCTACCAAAACCGGTGAATTAAGCATTCATGCCCTAGAATTTCATA TTTTAAGCAAAACCATTGTGCCTTTACCTGAAAAGTTTCATGGACTGAGCGATATAGAATTGCGTTACCGCCAGCGCTAT TTGGATTTGATCGTCAATCCTAGCGTTAAAGATGTGTTTAAAAAGCGCAGTTTGATTGTCTCTAGCGTGCGGAAATTCTT TGAAATGGAAGGGTTTTTAGAAGTGGAAACCCCTATGATGCACCCCATTCCTGGCGGGGCGAACGCAAGGCCTTTTATCA CTTACCATAACGCTTTAGAGGTGGAGAGGTATTTAAGAATCGCCCCAGAATTATACCTTAAACGCCTGATTGTAGGGGGG TTTGAGGCGGTGTTTGAAATCAATCGTAATTTCAGAAATGAGGGCATGGATCACAGCCATAACCCCGAATTCACGATGAT TGAGTTTTATTGGGCGTATCACACTTATGAAGATTTGATTGAACTCAGTAAGAGGCTGTTTGACTACTTGCTAAAGACTT TAAATTTAGATTCAAAAATCATTTATAACGATATGGAAGTGGATTTCAACCAAACGAGCGTGATTTCCTATTTGGACGCT TTAGAAACGATAGGGGGCATTAGTAAGGATATTTTAGAAAAAGAAGACAGGCTTTTGGCTTATTTGTTAGAGCAAGGCAT CAAAGTAGAGCCAAACCTTACTTATGGTAAATTGCTCGCTGAAGCGTTTGATCATTTTGTAGAGCACCAACTCATTAACC CCACTTTTGTAACCCAATACCCTATTGAGATTAGCCCCTTAGCCAGACGCAACGATAGTAACCCTAATATTGCTGACAGG TTTGAATTGTTTATCGCAGGGAAAGAAATCGCTAACGGCTTTAGCGAGTTGAACGATCCTTTAGATCAATTAGAACGCTT TAAAAACCAAGTGGCTGAAAAAGAAAAAGGCGATGAAGAAGCCCAATACATGGATGAAGATTACGTGTGGGCCCTAGCCC ATGGAATGCCCCCAACCGCAGGGCAAGGCATAGGCATTGACCGATTAGTGATGCTACTCACTGGAGCTAAAAGCATTAAA GATGTGATTTTATTCCCAGCGATGCGTCCTGTTAAAAACGATTTTAATGTGGAGAGTGAAGAATAA Protein sequence : MFSNQYIQQRIHKANSLREEGKNPYQNGLKRSLTNAAFLEKYAYVKGLEEPKDKEKCESIVGRVKLLRLMGKACFIKVED ESTILQVYVSQNELNDEFKSLKKHLEVGDIVLVKGFPFATKTGELSIHALEFHILSKTIVPLPEKFHGLSDIELRYRQRY LDLIVNPSVKDVFKKRSLIVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHNALEVERYLRIAPELYLKRLIVGG FEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYHTYEDLIELSKRLFDYLLKTLNLDSKIIYNDMEVDFNQTSVISYLDA LETIGGISKDILEKEDRLLAYLLEQGIKVEPNLTYGKLLAEAFDHFVEHQLINPTFVTQYPIEISPLARRNDSNPNIADR FELFIAGKEIANGFSELNDPLDQLERFKNQVAEKEKGDEEAQYMDEDYVWALAHGMPPTAGQGIGIDRLVMLLTGAKSIK DVILFPAMRPVKNDFNVESEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-105 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_006934105.1 | lysyl-tRNA ligase | VFG1668 | Protein | 6e-106 | 50 |
