Gene Information

Name : C730_02790 (C730_02790)
Accession : YP_006936070.1
Strain : Helicobacter pylori Rif2
Genome accession: NC_018938
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein (cag20)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 572744 - 573856 bp
Length : 1113 bp
Strand : -
Note : COG0249 Mismatch repair ATPase (MutS family)

DNA sequence : 
ATGGCAGGTACACAAGCTATATATGAATCATCTTCTGCAGGATTCTTATCGGAAATTTCCTCAATCATCTCAAGCACAAG
TGGTGTTGCAGGGCCATTTGCAGGAATAGTAGCGGGTGCTATGTCAGCAGCGATTATTCCTATTGTTGTGGGATTTACTA
ATCCGCAAATGACCGCTATCATGACCCAATACAATCAGAGCATCGCTGAAGCCGTAAGCATGCCTATGAAAGCTGCTAAC
CAACAATACAACCAATTGTATCAAGGTTTTAACGATCAAAGCATGGCTGTGGGGAACAATATCTTAAATATCAGCAAATT
AACAGGGGAATTTAACGTGCAAGGCAACACGCAAGGCGCGCAAATTAGTGCCGTTAATAGTCAGATTGCAAGCATTTTAG
CGAGTAACACCACCCCTAAAAATCCTAGCGCTATTGAAGCTTATGCGACAAATCAAATCGCTGTTCCTAGTGTGCCAACA
ACGGTTGAAATGATGAGCGGTATCTTAGGCAATATTACAAGCGCGGCACCAAAATACGCCCTAGCTCTACAAGAGCAATT
GCGTTCTCAAGCAAGCAACAGCTCAATGAATGATACAGCCGATTCCCTTGATAGCTGTACCGCTTTAGGTGCACTTGTTG
GCTCATCAAAAGTGTTTTTTAGTTGCATGCAAATTTCTATGACGCCCATGAGTGTTTCTATGCCCACTGTTTATGCCAAA
TACCAAGCGTTASCNACTAATGCCCTAACTTCAGGCACTAATCCTATGACCACTCCTGCATGCCCTATTGGGGACAAAGT
TCTTGCCGTTTATTGCTATGCTGAAAAAGTAGCAGAAATTTTGAGGGAATACTATATAGAATTTGTGAAAAACAATACCA
ATTTGTTGCAAAACGCTTCTCAAATGATACTTAATCAATCAGGATTAGCTACTAGCACCTATGACACTCAAGCGATTTCT
AACATAAGCTCGCTATATAATTACAATATAGTAGCGAATAAATCTTTTTTGAAATCGCATTTGACTTACCTTGATTACAT
CAAAAACAAGCTTAAGGGGCAAAAAGATAGCTACTTAACAGAAAGGGTGCAAACTAAAATAATCGTGAAGTGA

Protein sequence : 
MAGTQAIYESSSAGFLSEISSIISSTSGVAGPFAGIVAGAMSAAIIPIVVGFTNPQMTAIMTQYNQSIAEAVSMPMKAAN
QQYNQLYQGFNDQSMAVGNNILNISKLTGEFNVQGNTQGAQISAVNSQIASILASNTTPKNPSAIEAYATNQIAVPSVPT
TVEMMSGILGNITSAAPKYALALQEQLRSQASNSSMNDTADSLDSCTALGALVGSSKVFFSCMQISMTPMSVSMPTVYAK
YQALXTNALTSGTNPMTTPACPIGDKVLAVYCYAEKVAEILREYYIEFVKNNTNLLQNASQMILNQSGLATSTYDTQAIS
NISSLYNYNIVANKSFLKSHLTYLDYIKNKLKGQKDSYLTERVQTKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0541 NP_207337.1 cag pathogenicity island protein (cag20) Virulence cag PAI Protein 3e-160 100
HP0541 BAD13929.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-159 99
cagH YP_005774530.1 cag island protein Virulence cag PAI Protein 6e-158 99
cagH AGC69803.1 cag pathogenicity island protein H Virulence cag PAI Protein 3e-159 99
cagH YP_005777282.1 cag island protein Virulence cag PAI Protein 1e-158 99
HP0541 BAD13957.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-159 99
cagH YP_005779052.1 cag island protein Virulence cag PAI Protein 1e-158 99
cag20 AAR03903.1 Cag20 Virulence cag PAI Protein 2e-159 99
cagH YP_005775741.1 cag island protein Virulence cag PAI Protein 8e-159 99
cag20 AAR03875.1 Cag20 Virulence cag PAI Protein 9e-160 99
HP0541 BAD14039.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-158 99
cagH YP_003728723.1 cag pathogenicity island protein H Virulence cag PAI Protein 7e-159 99
cag20 AAR03933.1 Cag20 Virulence cag PAI Protein 9e-160 99
cag20 AAR03964.1 Cag20 Virulence cag PAI Protein 7e-160 99
HP0541 BAD13793.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-159 99
HP0541 BAD13874.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-159 99
HP0541 BAD14012.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-157 98
HP0541 BAD13902.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-157 98
HP0541 BAD13984.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-158 98
HP0541 BAD14066.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-158 98
HP0541 BAD13847.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-158 98
cagH NP_223207.1 cag island protein Virulence cag PAI Protein 3e-159 98
HP0541 BAD13820.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-157 98
cagH AAC44699.1 CagH Virulence cag PAI Protein 1e-160 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
C730_02790 YP_006936070.1 cag pathogenicity island protein (cag20) VFG0300 Protein 1e-160 100