Gene Information

Name : C730_02780 (C730_02780)
Accession : YP_006936068.1
Strain : Helicobacter pylori Rif2
Genome accession: NC_018938
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein (cag18)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 570878 - 571591 bp
Length : 714 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAACACTCGTGAAAAATACCATATCTTCTTTTTTGCTCTTGTCTGTTTTGATGGCAGAAGATATAACAAGCGGTTT
AAAGCAACTGGATAGCACCTACCAAGAGACCAACCAACAAGTGCTCAAAAACTTAGATGAGATTTTTTCAACCACTAGCC
CTAGTGCTAATAATGAAATGGGTGAAGAAGATGCTCTAAACATCAAAAAAGCGGCCATTGCTTTGAGAGGAGATTTAGCG
TTATTGAAAGCCAATTTTGAAGCGAATGAGTTATTTTTCATCTCAGAAGATGTGATTTTCAAAACTTATATGTCTAGCCC
TGAACTTTTATTAACCTATATGAAAATCAATCCCTTAGACCAAAATACTGCTGAGCAACAATGCGGAATATCCGATAAAG
TTTTAGTTCTTTATTGTGAAGGGAAGCTGAAAATCGAGCAAGAAAAACAAAATATAAGAGAGCGTTTAGAAACTTCTCTA
AAGGCATATCAGAGCAACATTGGAGGTACAGCTTCCTTAATCACTGCTTCACAGACGCTTGTAGAAAGCCTAAAAAATAA
AAATTTCATCAAAGGAATCAGAAAGCTTATGTTAGCTCACAACAAGGTCTTTTTAAATTATTTAGAGGAGTTGGACGCAT
TAGAAAGATCCCTAGAACAAAGTAAGCGACAATACCTACAAGAAAGGCAATCAAGTAAGATCATTGTTAAATGA

Protein sequence : 
MKTLVKNTISSFLLLSVLMAEDITSGLKQLDSTYQETNQQVLKNLDEIFSTTSPSANNEMGEEDALNIKKAAIALRGDLA
LLKANFEANELFFISEDVIFKTYMSSPELLLTYMKINPLDQNTAEQQCGISDKVLVLYCEGKLKIEQEKQNIRERLETSL
KAYQSNIGGTASLITASQTLVESLKNKNFIKGIRKLMLAHNKVFLNYLEELDALERSLEQSKRQYLQERQSSKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0539 NP_207335.1 cag pathogenicity island protein (cag18) Virulence cag PAI Protein 2e-104 100
cag18 AAR03962.1 Cag18 Virulence cag PAI Protein 2e-103 99
cagL AAC44697.1 CagL Virulence cag PAI Protein 1e-103 99
cag18 AAR03931.1 Cag18 Virulence cag PAI Protein 5e-102 98
HP0539 BAD13982.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-103 98
cagL AGC69801.1 cag pathogenicity island protein L Virulence cag PAI Protein 8e-103 98
HP0539 BAD14037.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-103 98
cagL NP_223205.1 cag island protein Virulence cag PAI Protein 9e-102 98
cag18 AAR03873.1 Cag18 Virulence cag PAI Protein 2e-103 98
cagL YP_003728725.1 cag pathogenicity island protein L Virulence cag PAI Protein 1e-102 98
cag18 AAR03901.1 Cag18 Virulence cag PAI Protein 5e-102 98
HP0539 BAD14064.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-100 97
cagL YP_005775739.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-101 97
HP0539 BAD13927.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-101 97
HP0539 BAD13872.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-102 97
cagL YP_005777280.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-100 96
HP0539 BAD13955.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-100 96
cagL YP_005779054.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-101 96
HP0539 BAD14010.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-101 96
HP0539 BAD13818.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-101 96
HP0539 BAD13791.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-101 96
HP0539 BAD13845.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-100 96
cagL YP_005774532.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-100 96
HP0539 BAD13900.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-100 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
C730_02780 YP_006936068.1 cag pathogenicity island protein (cag18) VFG0298 Protein 7e-105 100