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Name : C695_07685 (C695_07685) Accession : YP_006893973.1 Strain : Helicobacter pylori Rif1 Genome accession: NC_018937 Putative virulence/resistance : Unknown Product : seryl-tRNA ligase Function : - COG functional category : - COG ID : - EC number : 6.1.1.11 Position : 1554214 - 1555461 bp Length : 1248 bp Strand : - Note : COG0172 Seryl-tRNA synthetase DNA sequence : ATGATTGATAGAAAACTTTTATTGCAAGATTTTGACAAGGTGGCTCTTTCTTTAAAAAAGCGTAATAATGCGATGGATGA TGAATTAGAGCGTTTGCGCGAAGTCATCACGCATTATAAAAAGCGACTCATTGAATTAGAAGGCTTGCAAGCCTTTCAAA ACAAGGTTTCTAAAGAATTTGGTATTAAGATGGCTCAAAAAGTGGATACAAGCGATCTCAAAAAAGAGCTAGAAAACAAT AAAATCAAATTGAATGAGCTTTCCAAAAGCGTGGGCGAATTGGAGCAACAAATTGATTTGAAGCTTTCCATAATCCCCAA TCTAGTGGATGAAAAAACCCCTTTAGGCACGAATGAAGAAGACAACATAGAAATTAAAAAAATCTTAACCCCAAGGGTTT TCACTTTCAAACCCAAAGAGCATTTTGAACTCGCTCAACAAAACGGCTGGATTGATTTTGAAAGCGGCGTGAAACTCGCC AAAAGCCGTTTTTCGGTCATCAGGGGTTTTGGGGCTAAAATTTATCGCGCGCTCATTCATTTAATGCTGGATTTTAATGA AAAAAATGGCTTTGAAATCATCTACACGCCGGCGTTAGTGAATGAAAAAATGCTTTTTGGGACCGGGCAATTACCCAAAT TCAAAGAAGATGTTTTCAAAATAGAAAATGAAAATTTGTATCTGATCCCCACCGCTGAAGTAACGCTCACTAATCTCTAC AACGACACGATCATTAGCGTTGAAAACCTCCCCATTAAAATGACCGCGCACACGCCTTGTTTCAGGAGCGAAGCAGGGAG CGCGGGCAAGGACACAAGGGGGATGATAAGACAGCACCAATTTGATAAAGTAGAATTAGTGGCTATCACGCACCCTAAAG AAAGCGATGTTATGCAAGAGCATATGCTAGAGAGCGCGAGCGAAATTTTAAAGGCTTTGGAATTGCCGCACCGGTTTGTG CAATTGTGCAGTGGGGATTTAGGTTTTAGCGCAAGCAACACGATAGATATTGAAGTGTGGCTGCCCGGGCAAAATTGCTA CAGAGAAATCAGCTCGGTGTCCAACACGAGGGATTTTCAAGCCAGGCGCGCCAAAATCCGCTTCAAAGAAAATCAAAAAA ACCAATTAGCGCACACCTTAAACGGCTCTTCTTTGGCGGTAGGCAGGACGATGGTCGCTTTAATGGAAAACCACCAGCAA GCGGATGGGAGCATCCACATTCCTAAGGCATTAGAAAAATACCTTTAA Protein sequence : MIDRKLLLQDFDKVALSLKKRNNAMDDELERLREVITHYKKRLIELEGLQAFQNKVSKEFGIKMAQKVDTSDLKKELENN KIKLNELSKSVGELEQQIDLKLSIIPNLVDEKTPLGTNEEDNIEIKKILTPRVFTFKPKEHFELAQQNGWIDFESGVKLA KSRFSVIRGFGAKIYRALIHLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLPKFKEDVFKIENENLYLIPTAEVTLTNLY NDTIISVENLPIKMTAHTPCFRSEAGSAGKDTRGMIRQHQFDKVELVAITHPKESDVMQEHMLESASEILKALELPHRFV QLCSGDLGFSASNTIDIEVWLPGQNCYREISSVSNTRDFQARRAKIRFKENQKNQLAHTLNGSSLAVGRTMVALMENHQQ ADGSIHIPKALEKYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 3e-77 | 46 |
