Gene Information

Name : fliP (Tph_c10980)
Accession : YP_006919819.1
Strain : Thermacetogenium phaeum DSM 12270
Genome accession: NC_018870
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1117917 - 1118699 bp
Length : 783 bp
Strand : +
Note : -

DNA sequence : 
ATGGGGGTGAGGAAGCGGTTTCTGACCGCCGGACTGGTGGCGGCGATGGCGATCTGTGGGCTTGTCTGCTGGCTCTCTCT
CGCACGAGAGGCGAGCGCTCAGTCGGTGCCTGTCCCCAGGGTCAACATAGAGGTCGGTACCGCCCAGAATCCTCAGGAGG
TATCCCAGAGCCTTCAGATTCTTTTGATCATTACTTTGCTGTCACTGGCGCCGGCGATTCTCATTATGATGACTTCCTTT
ACCAGGATCATCGTCGTCTTCTCCTTTTTAAGAAGCGCTCTGGCCACACAACAGATGCCCCCCAATCAGGTGCTGATCGG
GATTGCTTTGTTCTTAACGTTTTTTATCATGGCACCGACCTGGCAGGCGGTCAACCGCGATGCCCTGCAGCCTTTCCTGA
GGGGGGAGATCGATCAAGAGGTGGCCTTTGAACGGGGGATGGAACCCATCCGCACTTTTATGTTCAAGCAGACAAGGGAA
AAGGATCTGGCCCTCTTTGTCTCCTTGGCCAAAATACCCCGACCCCGCACTTATGAGGATATTCCGAACTATGTGCTTAT
ACCTGCGTTTGCCATCAGCGAATTGAAAACCGCCTTTCAGATCGGTTTTATGATATATATTCCCTTTTTGGTGATCGATA
TGATCGTCGCCAGTACCCTGATGTCCATGGGAATGTTGATGCTGCCGCCGATGATGATCTCCCTTCCTTTCAAAATTCTG
CTGTTTATTATGGTCGACGGCTGGCATTTACTGGTAAGATCCCTGATCCTGAGCTTTTCCTAA

Protein sequence : 
MGVRKRFLTAGLVAAMAICGLVCWLSLAREASAQSVPVPRVNIEVGTAQNPQEVSQSLQILLIITLLSLAPAILIMMTSF
TRIIVVFSFLRSALATQQMPPNQVLIGIALFLTFFIMAPTWQAVNRDALQPFLRGEIDQEVAFERGMEPIRTFMFKQTRE
KDLALFVSLAKIPRPRTYEDIPNYVLIPAFAISELKTAFQIGFMIYIPFLVIDMIVASTLMSMGMLMLPPMMISLPFKIL
LFIMVDGWHLLVRSLILSFS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-24 43
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-24 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-24 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-24 43
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-24 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 6e-26 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-26 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 9e-26 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 9e-26 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 7e-26 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-26 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 9e-19 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 9e-19 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 9e-19 41
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-18 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_006919819.1 flagellar biosynthetic protein FliP VFG2338 Protein 8e-42 58
fliP YP_006919819.1 flagellar biosynthetic protein FliP VFG2494 Protein 7e-42 57
fliP YP_006919819.1 flagellar biosynthetic protein FliP VFG1259 Protein 3e-42 57
fliP YP_006919819.1 flagellar biosynthetic protein FliP VFG2016 Protein 5e-39 55
fliP YP_006919819.1 flagellar biosynthetic protein FliP VFG0519 Protein 7e-25 43
fliP YP_006919819.1 flagellar biosynthetic protein FliP VFG0394 Protein 6e-27 42
fliP YP_006919819.1 flagellar biosynthetic protein FliP VFG0188 Protein 9e-27 42