|
Name : M5M_04465 (M5M_04465) Accession : YP_006915830.1 Strain : Simiduia agarivorans SA1 Genome accession: NC_018868 Putative virulence/resistance : Virulence Product : type VI secretion ATPase, ClpV1 family protein Function : - COG functional category : - COG ID : - EC number : - Position : 985892 - 988543 bp Length : 2652 bp Strand : + Note : COG0542 ATPases with chaperone activity, ATP-binding subunit DNA sequence : ATGATCAACATCAATCTGAAATCATTGGTTGACCGGATGGCACCTGCGTTGCGGGATGCACTCGAAGGGGCCGCCGGTCT GTCTATGGCGCAAAGTCACTACCATGTAGAGCTTGAACACTGGCTGATTAAAATTCTCGATAACGGCCAGTCCGACCTGC AATTGGTATTGGAAAAATTTGAAATCGACGTGCCACAGTTCGCACGCGAATTGGGCACGGCTATCGGAAAATTCAAAACC GGCAGCAGTCGACCTGCAGCACTGTCCACCAGTCTGGTGGATGCTGCCAAATATGCGTGGATGCTTGCATCTGTGGAATA TGGCCACGGCGCTATCACCTCGGGCCATCTGATCACTGCAGCATTGCTGGATGGGCAGCTCAAAGATCAATTGTTCACCG GCTGCAAAGAGTTACGCTCTATCGCTCCAGAATCATTAAGGGAGGCAGCTCGCGCGCTAATTGGTGCCGGTAAAGAGCTA CCACGGACCGAGTCCAGCAGGTCTGCTGTTGACCCTGCAGGTATCGAAGTCTCCAAATCGCCTGCGCTGGACAAATACAC CATCAACCTCACAGAGCGCGCAAAAAAGGGAGAGATCGATCCTGTATTAGGACGTGACGATGAAATCAGGCAATGCATCG ATATCCTTACCCGCCGTCGCCAGAACAACCCAATCCTGACCGGTGAAGCCGGCGTTGGGAAAACCGCCGTTGTAGAAGGC TTCGCCTTGCGCATTGCCCAAGGCGATGTACCTGAACCCCTCAGAAACGTTGCGGTCCGAACACTCGATCTCGGGCTATT ACAGGCAGGCGCAAGCGTTAAAGGTGAATTCGAAAATCGCCTCAAGAGCGTCATTGAAGAAGTACGCGCTTCGCTAACCC CGATTATCCTGTTCATCGATGAAGCGCATACCATGATTGGTGCAGGCGGAAAAGAAGGTCAGGGCGATGCGGCAAACTTA CTCAAGCCAGCACTGGCCCGCGGCGAGTTACGCACCATTGCAGCCACAACCTGGGCGGAATACAAGAAGTATTTCGAACG GGATCCAGCCCTGACCCGACGCTTTCAGGTGGTCAAGGTGGAAGAACCCGACGAGGCCACAGCTATCGATATGATGCGCG GTATCGCCACAAGCCTTACAGAACATCATAAGGTCCGGATACTGGACGAAGCCATAATCGCATCGGTCAGATTATCCCAT CGCTATATCCCCGGCAGGCAACTTCCAGACAAATCTGTCAGCTTACTGGATACCGCTTGTGCCCGCGTTGCACTCAGCCA GTCTGCAACACCCGGCGCAATTGAAGATTGCCGTCGGCAGATAGAACGCGCCGAAACCACGTTAAAACGCCTGCAAAGAG AACATGCGGCCAGTAACACTCAGCAAGAAGATATTGATCTATGGCATAGCCAAAAGCAGGCCGCCGAATCGCGATTGTCT GAACTCGAGCAGCAGTTAGTTGAAGAAACCGCCCTAATTGATGAAATCAAAGCAATTCATCAACGCATCGATGCCCATTT TGCCGGTAAAGAAGAAGACTTGATCAGCGATGACAGCTTCTCAAACCTGCAACACAGCCTGGTAGAGCTTTCCACTAAGC TCAAAGCTCTGCAGGGCAACACCCCACTGATGCAAGCGGCCGTGGATGAGCAGGCCATCGCCGAAGTCATTGCGAATTGG ACCGGTATTCCCGTTGGAAAAATGGTTGATGATGAAATACGCGCGGTCCAATCGCTCGCAACACGTCTGGGTGAACGGGT AATCGGTCAACCCCATGCACTGGAGGCTGTAGCGCAAGCAGTCCGCACTTCTCGTGCCGGCCTCACAGACCCACGCAAAC CCGTGGGCGTGTTCCTGTTCTGTGGTACCAGTGGCGTCGGAAAAACTGAAACAGCCCTGGCATTGGCAGATCAGCTCTTT GGAGGTGAGCAAAATATTACGACGATTAACATGTCGGAATTCAAGGAAGAGCATAAAGTTTCTATGCTGCTAGGCTCTCC ACCCGGTTACGTTGGCTATGGCGAAGGTGGCGTACTCACAGAGGCAGCGCGTCGTAAACCCTATTCCGTTATTCTGTTGG ATGAAATGGAAAAGGCACACCCCGGTGTACAGGATATTTTCTACAACCTGTTTGATAAGGGCACCATTAAAGACGGTGAA GGTCGTGACATTGACTTCAAAAATACTGTCATAATCATGACGTCAAATGCTGGTGAAGATGCAATTCGGGCTATTTTCCA GCAAGTGGAAGAAAAACCTGAACCGGATGTACTTTTGGACAATATCCGCCCGCATTTATTGCGCAGCTTCAAACCAGCGT TTTTGGGTCGAGCGAATGTCATCGCATATTACCCCCGTGGATCGACGACGTACCTGATGAAGATTGCGGCAATTAACATG AGAAAGATTGAACATCGTGTCAAGAGTCATTACGGCGCAGCGTTCAGCTACGATGAAGATGTTCTGCTGCATATTGTCGC CCGCTGCCAGGAATCTGACACCGGCGCCCGAAATATCGAAAACATTCTCAACCGGACATTGCTTCCTACGATGGCAGCCG AGTGTTTGGAAAAGCTTGCCAATGGTGAGCTGATCCAAAAACTCCATATCGGTGTTACAGAGGAAGGTGATTTCACCTAC CAGCTGAGCTGA Protein sequence : MININLKSLVDRMAPALRDALEGAAGLSMAQSHYHVELEHWLIKILDNGQSDLQLVLEKFEIDVPQFARELGTAIGKFKT GSSRPAALSTSLVDAAKYAWMLASVEYGHGAITSGHLITAALLDGQLKDQLFTGCKELRSIAPESLREAARALIGAGKEL PRTESSRSAVDPAGIEVSKSPALDKYTINLTERAKKGEIDPVLGRDDEIRQCIDILTRRRQNNPILTGEAGVGKTAVVEG FALRIAQGDVPEPLRNVAVRTLDLGLLQAGASVKGEFENRLKSVIEEVRASLTPIILFIDEAHTMIGAGGKEGQGDAANL LKPALARGELRTIAATTWAEYKKYFERDPALTRRFQVVKVEEPDEATAIDMMRGIATSLTEHHKVRILDEAIIASVRLSH RYIPGRQLPDKSVSLLDTACARVALSQSATPGAIEDCRRQIERAETTLKRLQREHAASNTQQEDIDLWHSQKQAAESRLS ELEQQLVEETALIDEIKAIHQRIDAHFAGKEEDLISDDSFSNLQHSLVELSTKLKALQGNTPLMQAAVDEQAIAEVIANW TGIPVGKMVDDEIRAVQSLATRLGERVIGQPHALEAVAQAVRTSRAGLTDPRKPVGVFLFCGTSGVGKTETALALADQLF GGEQNITTINMSEFKEEHKVSMLLGSPPGYVGYGEGGVLTEAARRKPYSVILLDEMEKAHPGVQDIFYNLFDKGTIKDGE GRDIDFKNTVIIMTSNAGEDAIRAIFQQVEEKPEPDVLLDNIRPHLLRSFKPAFLGRANVIAYYPRGSTTYLMKIAAINM RKIEHRVKSHYGAAFSYDEDVLLHIVARCQESDTGARNIENILNRTLLPTMAAECLEKLANGELIQKLHIGVTEEGDFTY QLS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-163 | 45 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 9e-139 | 41 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 1e-138 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| M5M_04465 | YP_006915830.1 | type VI secretion ATPase, ClpV1 family protein | VFG2076 | Protein | 0.0 | 49 |
| M5M_04465 | YP_006915830.1 | type VI secretion ATPase, ClpV1 family protein | VFG2084 | Protein | 2e-150 | 44 |
