Gene Information

Name : M5M_06405 (M5M_06405)
Accession : YP_006916206.1
Strain : Simiduia agarivorans SA1
Genome accession: NC_018868
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1425655 - 1426362 bp
Length : 708 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGCCCGACAAGCGATTTTTAATCATCGAAGATGAACCCGACCTCGCCAATCTCGTGGCGCTGCACCTGCATGAATTGTC
CGGGGAGTGCGTGATTTGTCACGATGGCGAGTCCGGTTTGCGGGAAGCGCTGAGCGGCAAATACCAGGTGGTATTGCTGG
ATTTGCGTTTACCGGGCAAAGACGGGTTGGATGTGTGTCGCGAATTGCGTGCGCAGGGTGTGCAGACGCCGGTATTGATG
CTCACCAGCCGCGCCACCGAATTGGATCGGGTATTGGGGCTTGAGTTAGGCGCCGATGATTATCTCACCAAACCCTTCAG
TAATCTCGAACTGGTTGCCCGCGTGAAGGCGCTATTGCGTCGCGCGCAGATGGGGCAGACGCCGGTGGCACCCAAAGAAT
TGTTGCAGGTGGGCGATGTGCAAGTAAATGGCCGCGATCGCACGGTGGCCGTGTGTGGCCGGGCCATTGAATGCACCGCC
AAGGAATTTGATTTGCTGCAGCATTTTGCGCGCTTTCCCGGCAAGGTGTTCCGGCGCATGGATTTATTGCAGGACGTGTG
GGGTTACGGGCACGAAGGTTACGAACACACGGTCAACAGCCACATCAATCGGCTGCGCGCAAAAATAGAACCCGATCCCG
CATCACCGAAATACATTCTTACCGTCTGGGGCGTGGGTTACAAATTTGATGCGGGGATCGAGGCATGA

Protein sequence : 
MPDKRFLIIEDEPDLANLVALHLHELSGECVICHDGESGLREALSGKYQVVLLDLRLPGKDGLDVCRELRAQGVQTPVLM
LTSRATELDRVLGLELGADDYLTKPFSNLELVARVKALLRRAQMGQTPVAPKELLQVGDVQVNGRDRTVAVCGRAIECTA
KEFDLLQHFARFPGKVFRRMDLLQDVWGYGHEGYEHTVNSHINRLRAKIEPDPASPKYILTVWGVGYKFDAGIEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-47 49
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 8e-48 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
M5M_06405 YP_006916206.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 9e-40 42
M5M_06405 YP_006916206.1 winged helix family two component transcriptional regulator CP001918.1.gene5135. Protein 4e-24 42
M5M_06405 YP_006916206.1 winged helix family two component transcriptional regulator AE016830.1.gene1681. Protein 1e-46 41
M5M_06405 YP_006916206.1 winged helix family two component transcriptional regulator HE999704.1.gene2815. Protein 2e-41 41
M5M_06405 YP_006916206.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 3e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
M5M_06405 YP_006916206.1 winged helix family two component transcriptional regulator VFG1702 Protein 6e-48 49
M5M_06405 YP_006916206.1 winged helix family two component transcriptional regulator VFG1563 Protein 4e-48 48
M5M_06405 YP_006916206.1 winged helix family two component transcriptional regulator VFG1389 Protein 1e-28 42