|
Name : DCF50_p1408 (DCF50_p1408) Accession : YP_006913399.1 Strain : Dehalobacter sp. CF Genome accession: NC_018867 Putative virulence/resistance : Unknown Product : Type I restriction-modification system, restriction subunit R Function : - COG functional category : - COG ID : - EC number : 3.1.21.3 Position : 1439736 - 1442930 bp Length : 3195 bp Strand : - Note : - DNA sequence : ATGCCTAGAAGCAATTCGTTTTGTGAATCTGAACTGGAACAGGCAACCCTTGAGTGGTTTGAAGAATTAAACTATGACAT TATATTTGCTCCAGATATAGCACCAGATGGAGAGTATGCTGAGCGTGAAGACTATTCCGATGTAATCTTGCAGGAACGTT TGAAAGAGGCACTTGCAAGAATTAATCCCACACTTCCTGAAGATGCACTGGAAGATGCATTTAGGCGAATACTTATCCCT CAAAGTCCTAGCCTTTTAATGAATAATAAAGCTTTTCAGAAAATGGTTACTGATGGGGTTGATGTATCATACCGCCAGAA AGACGGTACGATTAAATACACGCAAGCAAAGGTGTTTGATTTTGAGAAAGTAAATAACAACGATTGGGTAGCTGCTAATC AATTTACTGTTGTTGAAAATAGAGTGGATAAACGCCCTGATGTTGTGGTTTTTGTGAATGGCATCCCTCTTGTTGTAATA GAACTTAAAAATGCTTCTAATGAGGATGTGGATATATCTGACGGATATAACCAACTTCAAACCTACAAAATGAGTATACC ATCACTTTTTACATATAATTCATTTATGGTTACTTCAGATGGTATTAATGCCAGAGCAGGAACATTGACCTCCGATGAAG ATAGATTTATGGCTTGGCGTACCATTGAGGGAGATGAAGTCGCTTCACTTTCCATACCACAGCTTGAAGTTTTGATTAAA GGTATGTTTGATAAAGAACGTTTCCTCGATATTATTAAGCAGTTTATACTTTTTCAAACCGATGGAAGTGATACCTTCAA GATACTTGCAGGATATCATCAGTACCATGCAGTTAATAAAGCTGTAGAGAGTACCGAGCGTGCCACAATGGAAACAGGCG ACCGCAGAATCGGAGTTGTTTGGCATACACAGGGTAGTGGGAAATCCCTCTCTATGGTATTTTACGCTGGAAAGCTTGTA ATTTCTGAGGAACTTGAAAATCCGACAATTGTGATTATAACAGATAGAAATGACTTAGATGACCAACTATTTACTACCTT TGCAAAGTCAAAGGATTTATTAAGAGGTGAACCACAACAAGCAGAGGATAGAGGACATTTAAGGGAATTATTAAACAATA GAACTTCTGGCGGTATTATATTTACAACCATTCACAAGTTTGCTCCCGAAGACAAGGGTGACTCAGTACCTGTGCTTACA GACAGGAAAAACGTTATAGTAATGGCAGACGAAGCACACCGAAGCCAATACGGATTTGGTGCAGATGTTGTGAAAAGTGA GACAGAAGCCAGTGTTAAATATGGATATGCAAAATATATGAGGGATAGTCTGCCCAATGCTTCATATATAGGCTTTACGG GAACACCAGTTGAACTCACAGATAAAAACACTCGTGCTGTGTTTGGTGATTATATTGATGTTTATGATATGACCAGAGCG GTTCAAGATGAAACAACGGTTAAGATATTCTATGAAAGCAGAATTGCTAAACTTGATTTACCAGAGGATTTAAAGCCAAA GATAGATACCGAGTATGATGAAATAACAGAATATCAAGAATACAACCAAAAGGAGAAGCTAAAGAGCAGATGGTCTAGAC TCGAGGCTATTGTTGGAGCAGAAAAAAGAATTCAGGTTGTTGCAAAAGATATTGTAGAGCACTTTGAAAAACGCCAAGCA GCACAGGAATATGAAGGCGGTAAAGCAATGATTGTTGCAATGTCAAGGCGTATTGCCATTGACCTGTATAAAGAGATTGT GCTACTACGCCCTGATTGGCACTCTGATGAACTGATGGAAGGTAAAATTAAAGTTGTTATGACGGGTGCATCAAGTGATC CTGCTGATTGGCAGAAGTTTATCGGGACTAAGGCAACAAGAAAAGCATTAGACAAGCGTATGAAGGATAAAAATGATGAG CTACAGCTTGTTATTGTACGTGATATGTGGCTTACTGGTTTTGATGTTCCAAGTATGCATACTATGTATATAGATAAGCC AATGCAGGGACATAATTTGATGCAGGCAATCGCAAGAGTTAATCGTGTGTTTAAGGAAAAGCAGGGCGGTCTTGTTGTTG ACTACATCGGAATTGCAGAGAACCTAAAAGAAGCACTTTCAAAATATACGGAAAGCGATAAAAAAACAACAGGTGTCGAT ACAGATGTTGCAGCAGAGCTTTTGCTTGAAAAACATGACCTTATCAAAGAATTATTGCATGGGCATGATTACAGTAAATT CTTTACAGGTTCGGCTAGAGAAAAGATGCAGGCTATTGTTGAAACAATGGATTACATTATTGGGCTACGTGAGGACAGAA AGAACGATTATATAAAGCTGGTAACTGAACTTACAAGAGCTTATTCATTATGTGCCACAACTGATATTGCTGAACGGCTT AATGTGGAAATCGGATTCCATAAGTCAGTAAAAGCTGGCATAGTGAAGATGATTACAGACAATACAAAGAAAAAGACAAA CTCACAGTTAGATAGCGAACTTAATCAGCTTATATCTAAGTCAATATCTTCTGATGAGGTTATAGATATTCTGGAAGCAG TTGGGCTACAAAAACCGAATATTGCAATTTTATCCGATGAATTTTTAGAAGAAGTTAAAGGAATGAAGCAAAAGAACCTT GCAGTTGAGCTTTTAAACAGGCTACTAAAAGGAAGTATTAAAGCATTCTCAAAACGTAACCTTGTTCAGTCTAAGAAGTT CTCAGAGCTTTTAGAAAATGCTCTTAAAAAGTATCAGAACCGCACTATTGAAACTACACAGATTATTATGGAGCTTATTG AGCTTGCAAAAGAAATCAATGAGGCTAAAAAGAGAGGGGAAAACTCAGGACTAACCGCAGATGAGCTTGCATTTTATGAT GCACTTTCTTTTGATGAAGCTGCAAAAGGCGAATTGAGTGATGATATATTAAAGCAAATCGCAAGGGATTTGACAGATTC ATTAAAACGTAATATGAGTGTTGACTGGAATATTCGTTCAAGCGTTCAATCAAAAATGAAAATGATTATTAAGAGACTTC TTAAAAAGTATGGATATCCTCAAGATAAGAGAGACCAAGCAACAGAAACCGTACTTGAGCAGGCAAGATTGATGTGTGTT AATGAAACTATTTATTATGAGAGTAATAAAGCCCAATACTCCAAGGTTGCTGAGGATAGAGAAAAAAGCTATTAA Protein sequence : MPRSNSFCESELEQATLEWFEELNYDIIFAPDIAPDGEYAEREDYSDVILQERLKEALARINPTLPEDALEDAFRRILIP QSPSLLMNNKAFQKMVTDGVDVSYRQKDGTIKYTQAKVFDFEKVNNNDWVAANQFTVVENRVDKRPDVVVFVNGIPLVVI ELKNASNEDVDISDGYNQLQTYKMSIPSLFTYNSFMVTSDGINARAGTLTSDEDRFMAWRTIEGDEVASLSIPQLEVLIK GMFDKERFLDIIKQFILFQTDGSDTFKILAGYHQYHAVNKAVESTERATMETGDRRIGVVWHTQGSGKSLSMVFYAGKLV ISEELENPTIVIITDRNDLDDQLFTTFAKSKDLLRGEPQQAEDRGHLRELLNNRTSGGIIFTTIHKFAPEDKGDSVPVLT DRKNVIVMADEAHRSQYGFGADVVKSETEASVKYGYAKYMRDSLPNASYIGFTGTPVELTDKNTRAVFGDYIDVYDMTRA VQDETTVKIFYESRIAKLDLPEDLKPKIDTEYDEITEYQEYNQKEKLKSRWSRLEAIVGAEKRIQVVAKDIVEHFEKRQA AQEYEGGKAMIVAMSRRIAIDLYKEIVLLRPDWHSDELMEGKIKVVMTGASSDPADWQKFIGTKATRKALDKRMKDKNDE LQLVIVRDMWLTGFDVPSMHTMYIDKPMQGHNLMQAIARVNRVFKEKQGGLVVDYIGIAENLKEALSKYTESDKKTTGVD TDVAAELLLEKHDLIKELLHGHDYSKFFTGSAREKMQAIVETMDYIIGLREDRKNDYIKLVTELTRAYSLCATTDIAERL NVEIGFHKSVKAGIVKMITDNTKKKTNSQLDSELNQLISKSISSDEVIDILEAVGLQKPNIAILSDEFLEEVKGMKQKNL AVELLNRLLKGSIKAFSKRNLVQSKKFSELLENALKKYQNRTIETTQIIMELIELAKEINEAKKRGENSGLTADELAFYD ALSFDEAAKGELSDDILKQIARDLTDSLKRNMSVDWNIRSSVQSKMKMIIKRLLKKYGYPQDKRDQATETVLEQARLMCV NETIYYESNKAQYSKVAEDREKSY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 55 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 55 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 55 |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 49 |
