Gene Information

Name : DHBDCA_p2944 (DHBDCA_p2944)
Accession : YP_006911956.1
Strain : Dehalobacter sp. DCA
Genome accession: NC_018866
Putative virulence/resistance : Unknown
Product : Ribosomal RNA large subunit methyltransferase H
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3032885 - 3033367 bp
Length : 483 bp
Strand : -
Note : -

DNA sequence :
ATGCTGCAGATCAAAATTCTGGCGGTAGGGAAAATCAAAGAAAATTATTTAAGAGAAGGGCTGAAGGAATACACCAAGCG
TCTTGGCGCGTACATCCGGCTTGAGATGATTGAAGTTGAGGACGAACCATGCCCCGAAAAGGCATCAGCTGTCGACGAAG
CAAAAGTAAAACAAAAAGAAGCTGAAAAGGTCCTTAAATTAATTTCACCTCAGGATTATGTGGTTTTGCTGGATCTTCTG
GGAAAGGAACTTTCTTCACCCGAACTTGCCGCTTTGTTTGATGAAAAAGGACTTTCGGGCCAGAGCCGGATCACTTTTGT
GATCGGCGGATCTCTCGGTACGGCAGATGAAATCCGAAAACGCGCCGATTACCGGTGGTCGTTCTCGAAGCTTACCTTTC
CGCATCAGATGATCAGGCTTGTCCTGCTGGAGCAGATTTACCGGGCGTGCAAGATCAGCAAAGGTGAACCCTACCACAAA
TAG

Protein sequence :
MLQIKILAVGKIKENYLREGLKEYTKRLGAYIRLEMIEVEDEPCPEKASAVDEAKVKQKEAEKVLKLISPQDYVVLLDLL
GKELSSPELAALFDEKGLSGQSRITFVIGGSLGTADEIRKRADYRWSFSKLTFPHQMIRLVLLEQIYRACKISKGEPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 1e-30 53
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 1e-29 51
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-30 50
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 1e-30 50
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-30 50
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 1e-30 50
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 2e-29 50
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 1e-30 50
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 1e-30 50
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 1e-30 50
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 1e-30 50
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 1e-30 50
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 1e-30 50
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 1e-30 50
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 7e-30 50
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 7e-30 50
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 1e-30 50
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 1e-28 48