Gene Information

Name : BN117_4143 (BN117_4143)
Accession : YP_006897881.1
Strain : Bordetella parapertussis Bpp5
Genome accession: NC_018828
Putative virulence/resistance : Virulence
Product : response regulatory protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4452494 - 4453165 bp
Length : 672 bp
Strand : +
Note : -

DNA sequence : 
ATGGCTATCCTCGTCATCGAAGACGACCTCAAGACTGGCGACTACCTGAAGAAAGGCTTGCTGGAATCCGGCTATTCCGT
GGATCTCGCCCGCAATGGCATCGACGGCCTGCACCGCCTGCGCGAGCAGCGCTACGACGTGCTGGTGCTCGATGTCATGC
TGCCGGGCAAGGACGGCTGGCAGGTCATCGAAGAGGTACGCCAGGACTCCGACGTGCCGGTCATCTTCCTGACGGCGCGC
GACCATGTCGCCGACCGCATCCGGGGCCCGCGGCTGGGCGCCGACGACTACCTGGTCAAGCCGTTCTCCTTCGCCGAGCT
GGTGCTGCGCATCCAGACGATGCTGCGGCGCGGCGCGGCGCGCGCGGCCGAAACGCTGCAGGTCGCCGACCTGCGGCTCG
ACCCGGTGCGGCGCAAGGTCACCCGCGGCGGCGCCAGCATCGTCCTCACCAACAAGGAGTTCATGCTCCTGCACCTGCTC
ATCAGAAGGCAGGGCGAAGCCCTGTCGCGCACCATCATCGCCTCCGAAGTCTGGGACATGAACTTCGACAGCGACACCAA
CGTGGTGGACGTGGCCATCAAGCGCCTGCGCGCCAAGGTCGACGCCCCGTTCCCCCTCAAGCTGATCCAGACCGTGCGCG
GCATCGGCTACGCCCTGGCGGAGCAGCCTTGA

Protein sequence : 
MAILVIEDDLKTGDYLKKGLLESGYSVDLARNGIDGLHRLREQRYDVLVLDVMLPGKDGWQVIEEVRQDSDVPVIFLTAR
DHVADRIRGPRLGADDYLVKPFSFAELVLRIQTMLRRGAARAAETLQVADLRLDPVRRKVTRGGASIVLTNKEFMLLHLL
IRRQGEALSRTIIASEVWDMNFDSDTNVVDVAIKRLRAKVDAPFPLKLIQTVRGIGYALAEQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-54 55
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-53 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BN117_4143 YP_006897881.1 response regulatory protein BAC0125 Protein 8e-65 62
BN117_4143 YP_006897881.1 response regulatory protein BAC0197 Protein 1e-64 59
BN117_4143 YP_006897881.1 response regulatory protein BAC0083 Protein 4e-60 57
BN117_4143 YP_006897881.1 response regulatory protein BAC0111 Protein 4e-59 56
BN117_4143 YP_006897881.1 response regulatory protein BAC0308 Protein 2e-58 56
BN117_4143 YP_006897881.1 response regulatory protein BAC0638 Protein 2e-52 55
BN117_4143 YP_006897881.1 response regulatory protein BAC0347 Protein 3e-53 54
BN117_4143 YP_006897881.1 response regulatory protein AE000516.2.gene3505. Protein 2e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BN117_4143 YP_006897881.1 response regulatory protein VFG0596 Protein 1e-54 55
BN117_4143 YP_006897881.1 response regulatory protein VFG1390 Protein 2e-39 44
BN117_4143 YP_006897881.1 response regulatory protein VFG1389 Protein 5e-32 44