Gene Information

Name : BN117_0373 (BN117_0373)
Accession : YP_006894441.1
Strain : Bordetella parapertussis Bpp5
Genome accession: NC_018828
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 386312 - 387025 bp
Length : 714 bp
Strand : -
Note : -

DNA sequence : 
ATGTGGCAGTGTCTGCTTATTGAGGATGATCAAGCCAACGCGCGCTATCTCGCCAATGGCCTGACGGAGCTGGGGCACAT
GGTTACCGTCAGCGGGGATGGGGCGAGCGGCCTGGAGAATGCCATGAAGGACCAATGGGACATCATCATCCTGGACCGCA
TGCTGCCCAATAACGTGGATGGCCTTTCAATACTTTCCACGCTGCGGGCGCTGGGCAAGAAAACGCCGGTCCTGGTGCTC
AGCGCGCTGTCGGCTGTCGACGACCGGGTTGACGGTTTACGGGCCGGCGGTGACGACTATCTGGTCAAGCCGTTCTCCTT
CTCCGAGCTGGTTGCCAGGCTGGATGCCCTGGTCAGGCGGACGCGCCCCGATCCGGACGTGAAGGAACTGCGGATTGCGG
ATCTGTCGGTCAATGTCGCCACGCAGAAAGTGCAACGCGCCGGAAGACCAATATCCCTGCAGCCGCAGGAGTTCCGGTTA
TTGGTCTATCTCATGTTGCACGCTCACCGGATCGTGACGCGAACGATGTTGCTCGAGACGATCTGGGGCTACAGCTTCGA
CCCGCAGTCGAATGTGATCGATGTCCAGGTCAGCCGGTTGCGCCGCAAGATAGACACTGCCTCGGCGACCCCGCTGATTC
ACACCGTACGCGGCGCCGGATACACCCTTTCCGATAAGCAGGGGCCCGGCAACATGGACCTCGACAAAGCATGA

Protein sequence : 
MWQCLLIEDDQANARYLANGLTELGHMVTVSGDGASGLENAMKDQWDIIILDRMLPNNVDGLSILSTLRALGKKTPVLVL
SALSAVDDRVDGLRAGGDDYLVKPFSFSELVARLDALVRRTRPDPDVKELRIADLSVNVATQKVQRAGRPISLQPQEFRL
LVYLMLHAHRIVTRTMLLETIWGYSFDPQSNVIDVQVSRLRRKIDTASATPLIHTVRGAGYTLSDKQGPGNMDLDKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-38 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-37 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BN117_0373 YP_006894441.1 transcriptional regulator BAC0308 Protein 6e-42 45
BN117_0373 YP_006894441.1 transcriptional regulator BAC0125 Protein 2e-40 44
BN117_0373 YP_006894441.1 transcriptional regulator BAC0347 Protein 7e-43 44
BN117_0373 YP_006894441.1 transcriptional regulator BAC0197 Protein 1e-38 43
BN117_0373 YP_006894441.1 transcriptional regulator BAC0111 Protein 5e-45 43
BN117_0373 YP_006894441.1 transcriptional regulator AE016830.1.gene1681. Protein 6e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BN117_0373 YP_006894441.1 transcriptional regulator VFG0596 Protein 3e-38 44
BN117_0373 YP_006894441.1 transcriptional regulator VFG1389 Protein 1e-36 43
BN117_0373 YP_006894441.1 transcriptional regulator VFG1390 Protein 4e-40 41