|
Name : clpB (BN117_3045) Accession : YP_006896871.1 Strain : Bordetella parapertussis Bpp5 Genome accession: NC_018828 Putative virulence/resistance : Virulence Product : ATP-dependent protease, ATPase subunit Function : - COG functional category : - COG ID : - EC number : - Position : 3287629 - 3290226 bp Length : 2598 bp Strand : - Note : - DNA sequence : ATGCGATTCGACAAACTTACCACCAAGTTCCAGCAGGCCCTGGCGGACGCGCAAAGCCTGGCCGCCCGTAACGATCATCC CTATATCGAGCCCGTCCATGTGCTGGCGGCCCTGTTGGGCGACCCCGACAGCGGCGCGGCCAGCCTGCTGGCGCGCGCCG GCGTCGCCGTCAACCGCGTGCAGCCGGCCATCGACAGCGCCCTGAAGGGCCTGCCGCAGGTGCAGGGCGAGGACAACGTC CAGGTCGGGCGCGAGCTGCAAAGCGTGCTCGTGCGCACCGACAAGGAGGCCGCGCGGCGCGGCGACACCTACATCGCCAG CGAGCTGTTCCTGCTGGCGCTGGCCGACGACAAGGGCGACGCCGGCCGCATCCTGCGCGAGGCGGGCCTGCAGAAGAAGG CCCTGGAAGCGGCCATCGACGCCGTGCGCGGCGGCGAGAACGTCTCGGGCGCGGAAGGCGAGTCCAACCGCGAGGCGCTG TCCAAGTACACGCTGGACCTCACCGAGCGCGCCCGCCAGGGCAAGCTGGATCCGGTCATCGGCCGCGACGACGAAATCCG CCGCACCATACAGATCCTGCAGCGCCGCACCAAGAACAACCCCGTGCTGATCGGCGAACCCGGCGTCGGCAAGACCGCCA TCGTCGAAGGGCTGGCGCAACGCATCGTCAACGACGAGGTGCCCGAGACGCTGCGCGGCAAGCGCGTGCTCTCGCTGGAC CTGGCGGCGCTGCTTGCCGGCGCCAAGTTCCGTGGCGAGTTCGAGGAACGCCTGAAGGCCGTGCTCAAGGAGCTGGCCCA GGACGACGGCCAGAACATCGTCTTCATCGACGAACTGCACACCATGGTCGGGGCGGGCAAGGCCGAAGGGGCCATGGACG CCGGCAACATGCTCAAGCCGGCGCTGGCGCGCGGCGAGCTGCATTGCATCGGCGCCACCACGCTGGACGAATACCGCAAG TACATCGAAAAGGATGCCGCGCTCGAGCGCCGCTTCCAGAAGGTGCTGGTCGGCGAGCCCGACGTGGAATCCACCATCGC CATCCTGCGCGGGCTGCAGGAGCGCTACGAGCTGCACCACGGCGTCGAGATCACCGATCCGGCCATCGTGGCGGCGGCCG AGCTGTCGCACCGCTACATTACCGACCGGTTCCTGCCCGACAAGGCAATCGACCTGATCGACGAGGCCGGCGCGCGCATC CGCATGGAAATCGACTCCAAGCCCGAAGTGATGGACCGCCTGGACCGGCGCATCATCCAGCTCAAGATCGAACGCGAAGC CGTCAAGAAGGAAACCGACGACGCCTCCATGCGCCGCCTGGCCGTGATCGAGGAAGAGCTGGAGAAGCTGCAGCGCGAAT ACAACGACTACGAGGAAATCTGGAAAGCCGAGAAGGCCGCCGTGCAGGGCACTCAGGCCATCAAGGAAGAGATCGACCGC GTGCGCGCCGAGATGGCCGAACTGCAGCGCAAGGGCCAGTTCGACAAGCTGGCCGAGCTGCAATACGGCAAGCTGCCCGA GCTCGAGGCGCGCCTGAAGGCCGCCGACAGCGCCGAGCGCGAGGCCGGCGAATCCGACAGCGGCAAGCCGCGCCTGTTGC GCACCCAGGTGGGCGTCGAGGAAATCGCCGAGGTCGTCTCGCGCGCCACCGGCATCCCGGTGGCCAAGATGATGCAGGGC GAACGCGACAAGCTGCTGCGCATGGAAGATTTCCTGCACAAGCGCGTCGTGGGCCAAGACGAAGCCGTGCGGCTGGTTTC CGATGCCATCCGGCGTTCGCGCGCGGGCCTGGCGGATCCGTCGCGTCCGTATGGTTCGTTCCTGTTCCTCGGGCCCACCG GCGTGGGCAAGACGGAGCTGACCCGTGCCCTGGCGGATTTCCTGTTCGACTCCGAAGAGCACATGATCCGCATCGACATG AGCGAGTTCATGGAGAAGCATTCCGTGGCGCGCCTGATCGGCGCGCCGCCGGGATACGTGGGCTACGAAGAAGGGGGCTA CCTGACCGAGGCGGTGCGCCGCAAGCCGTACAGCGTGATCCTGCTCGACGAGGTCGAAAAGGCGCATCCCGACGTGTTCA ACGTGCTGCTGCAGGTGCTCGACGACGGCCGCCTGACCGACGGCCAGGGGCGCACGGTGGACTTCCGCAATACGGTCATC GTCATGACGTCCAACCTTGGGTCGCAGCATATACAAAGCATGGCGGGCAAGCCGTACGAGGTCATCAAGGAAGTCGTGTG GGACGAGCTCAAGCATACGTTCCGCCCCGAGTTCCTGAACCGTATCGATGAAGTCGTGGTCTTCCATGGCCTGGAAGCCC AGCACATCGAGTCCATCGCCCGGATCCAGCTCAAGCGGCTGGGCGAGCGTCTCGAGAAGCAGGAGATGCGCCTGGACGTG TCCGATGCGGCGCTGGCGGAAATCGCACGCTCGGGCTTCGACCCGGTGTTCGGCGCCCGGCCGCTCAAGCGGGCCATCCA GCAGCAGATCGAGAACCCGGTCGCCAAGCTGATTCTCGAAGGCGTGTTCGGACCGCGCGATGTGGTGCCGGTCGACTGGC AGGACGGCAAGTTCGTCTTCACGCGCACTTTGCAATAA Protein sequence : MRFDKLTTKFQQALADAQSLAARNDHPYIEPVHVLAALLGDPDSGAASLLARAGVAVNRVQPAIDSALKGLPQVQGEDNV QVGRELQSVLVRTDKEAARRGDTYIASELFLLALADDKGDAGRILREAGLQKKALEAAIDAVRGGENVSGAEGESNREAL SKYTLDLTERARQGKLDPVIGRDDEIRRTIQILQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNDEVPETLRGKRVLSLD LAALLAGAKFRGEFEERLKAVLKELAQDDGQNIVFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRK YIEKDAALERRFQKVLVGEPDVESTIAILRGLQERYELHHGVEITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAGARI RMEIDSKPEVMDRLDRRIIQLKIEREAVKKETDDASMRRLAVIEEELEKLQREYNDYEEIWKAEKAAVQGTQAIKEEIDR VRAEMAELQRKGQFDKLAELQYGKLPELEARLKAADSAEREAGESDSGKPRLLRTQVGVEEIAEVVSRATGIPVAKMMQG ERDKLLRMEDFLHKRVVGQDEAVRLVSDAIRRSRAGLADPSRPYGSFLFLGPTGVGKTELTRALADFLFDSEEHMIRIDM SEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVI VMTSNLGSQHIQSMAGKPYEVIKEVVWDELKHTFRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDV SDAALAEIARSGFDPVFGARPLKRAIQQQIENPVAKLILEGVFGPRDVVPVDWQDGKFVFTRTLQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-92 | 41 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 3e-90 | 41 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 2e-90 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_006896871.1 | ATP-dependent protease, ATPase subunit | VFG2076 | Protein | 3e-97 | 44 |
