Gene Information

Name : gabD (BN117_1509)
Accession : YP_006895482.1
Strain : Bordetella parapertussis Bpp5
Genome accession: NC_018828
Putative virulence/resistance : Unknown
Product : succinate-semialdehyde dehydrogenase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1638101 - 1639570 bp
Length : 1470 bp
Strand : -
Note : -

DNA sequence :
ATGACGCAGTTGACCCAACCCCTGAGCCGCGCCGAACTGCTGCGCGACGCCTGCTACATCGACGGCAAGTGGGTAGGCGC
CGGCAACGGCCCGTCCATCCCGGTCGATAACCCGTCCACCGGCAAGACCATCATCTCGGTGCCCAAGCTGGGCCGCAAGG
AAGCCGAGCAGGCCATCGACGCCGCCGAGGCCGCCCTGCCCGCCTGGAGCGCCAGGACCGGCAAGGAGCGCGCCGCGATC
CTGCTGAAGTGGGCCCAGCTGACGATGGAAAACCAGCAGGACCTGGCCGTCATCATGACGTCCGAGCAAGGCAAGCCCGT
AGCCGAGGCCGCCGGCGAGATCGCCTACGCCGCGTCCTTCCTGGAGTGGTTCGCCGAAGAAGCCAAGCGCATCGACGGCG
ACATCCTGCAAAGCCCCAAGGGCGGCCAGCGCCTGATGGTGCTCAAGCAGCCCATCGGCGTGACCGCCGCCATCACGCCG
TGGAACTTCCCGGCCGCCATGATCACCCGCAAGGTCGGCCCGGCCCTGGCCGCCGGCTGCACCATGGTGGTCAAGCCGGC
CCAGCAGACGCCGCTGACCGCGCTGGCGCTGGCCGTGCTGGCCGAGCAGGCCGGCGTGCCGGCCGGCGTGTTCCAGGTCG
TGACCGGCAGCTCGCGTGAAATCGGCGCGGCCCTGTGCGAAAGCGAAGTGGTACGCAAGCTGAGCTTCACCGGCTCGACC
GAAGTCGGCCGCACGCTCATGGAGCAATGCGCGCCCACCATCAAGAAACTGTCGCTGGAACTGGGCGGCAACGCGCCGTT
CATCGTGTTCGACGACGCCGACCTGGATCGCGCCATCGACGGCATCCTGGCCTCCAAGTACCGCAACGCCGGCCAGACCT
GCGTATGCGCCAACCGCATCTACGTGCAGGCCGGCGTCTACGAGGAAGTGGCCAAGCGCCTGGTCGAGAAGGTCAACGCC
ATGAAGGTGGGCGACGGCTTCGAACAGGGCGTCACCCAGGGCCCGCTGATCGACACCGCCGCCGTGGCCAAGGTGCAGGA
ACACATCGCCGACGCCACCGCGCACGGCGCCAAGGTCATCGCCGGCGGCCAGCCGCATGCGCTGGGCGGCAGCTTCTTCC
AGCCCACGGTGGTGCGCGACGTCACGCAGTCGATGCGCTTTGCCGTCGAGGAAACCTTCGGCCCGGTCGCCCCGCTGTTC
AAGTTCGAAAGCGAAGACGAAGTCATCGGCATGGCCAACAACACCATCTTCGGCCTGGCCGCCTACTTCTACACGCGCGA
CTACGCCCGGATCTGGCGCGTCTCCGAAGCGCTGGAATACGGCATCGTCGGCATCAACACCGGCATCATCTCCAATGAAG
TCGGCCCGTTCGGCGGCGTCAAGCAATCCGGCCTGGGCCGCGAAGGCTCGAAGTACGGGATCGAGGACTACCTCGAGCTG
AAATACCTCTGCGTGGACCTGGGCGCCTGA

Protein sequence :
MTQLTQPLSRAELLRDACYIDGKWVGAGNGPSIPVDNPSTGKTIISVPKLGRKEAEQAIDAAEAALPAWSARTGKERAAI
LLKWAQLTMENQQDLAVIMTSEQGKPVAEAAGEIAYAASFLEWFAEEAKRIDGDILQSPKGGQRLMVLKQPIGVTAAITP
WNFPAAMITRKVGPALAAGCTMVVKPAQQTPLTALALAVLAEQAGVPAGVFQVVTGSSREIGAALCESEVVRKLSFTGST
EVGRTLMEQCAPTIKKLSLELGGNAPFIVFDDADLDRAIDGILASKYRNAGQTCVCANRIYVQAGVYEEVAKRLVEKVNA
MKVGDGFEQGVTQGPLIDTAAVAKVQEHIADATAHGAKVIAGGQPHALGGSFFQPTVVRDVTQSMRFAVEETFGPVAPLF
KFESEDEVIGMANNTIFGLAAYFYTRDYARIWRVSEALEYGIVGINTGIISNEVGPFGGVKQSGLGREGSKYGIEDYLEL
KYLCVDLGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orf17 AAO17183.1 Orf17 Not tested tcd island Protein 4e-134 64
cur_1509 YP_001800903.1 NAD-dependent aldehyde dehydrogenase Not tested Not named Protein 6e-70 41