Gene Information

Name : Emtol_3824 (Emtol_3824)
Accession : YP_006874977.1
Strain : Emticicia oligotrophica DSM 17448
Genome accession: NC_018748
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4199791 - 4200465 bp
Length : 675 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: sli:Slin_4793

DNA sequence : 
ATGAAGATTTTAGTAGTTGAAGATGAACCCAAAACTTTGTATGCCATTCAGCAAGGGCTTACAGAAAATTTTTATGAAGT
GGATATTGCATTTGATGGCTTGATTGCCAAGCAATTAGCTCTTAGGAAATCTTATAATTGTATAATTACCGATGTGATTA
TGCCTGGTATTAATGGGCAAATGTTAATTCAGGAATTAAGAAAGGCAGGAATTCAAACACCTGTACTCATGCTTTCGGCA
TTGGGCGAAAGCGAAGATAAAATTGCTGGTTTTGATTCAGGTGCTGACCAATATTTAGTTAAACCTTTTCAATTTGCTGA
ATTATTAGCAAGGGTTAGGGCCCTGACAAAACGAAGTACCGAAACAATTATAAATACAAATACCCTACAATTTGCCGATT
TGGTGGTTAATTTAGATACGAAAGTTGTAAAAAGAGACAATCAAATAATTGACCTTACGGTTTTGGAATATAGACTTCTG
GAATTCTTTTTAAGAAATCAGGGAAAAGTTTTGTCGAAAAATCTAATTGCTGAGAATGTTTGGGATGTAAACTTTGATAA
AGGGACGAATTATATCGAGGTTTATATCAATTATTTAAGAAAAAAAATTGACAAAAATTTCAATAAAAAATTAATTCATA
CGGTATTCGGAATGGGTTATGTACTAAGAGAATAA

Protein sequence : 
MKILVVEDEPKTLYAIQQGLTENFYEVDIAFDGLIAKQLALRKSYNCIITDVIMPGINGQMLIQELRKAGIQTPVLMLSA
LGESEDKIAGFDSGADQYLVKPFQFAELLARVRALTKRSTETIINTNTLQFADLVVNLDTKVVKRDNQIIDLTVLEYRLL
EFFLRNQGKVLSKNLIAENVWDVNFDKGTNYIEVYINYLRKKIDKNFNKKLIHTVFGMGYVLRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-36 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-35 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Emtol_3824 YP_006874977.1 two component transcriptional regulator, winged helix family BAC0083 Protein 9e-46 50
Emtol_3824 YP_006874977.1 two component transcriptional regulator, winged helix family BAC0111 Protein 5e-48 50
Emtol_3824 YP_006874977.1 two component transcriptional regulator, winged helix family BAC0638 Protein 6e-38 50
Emtol_3824 YP_006874977.1 two component transcriptional regulator, winged helix family BAC0347 Protein 3e-41 48
Emtol_3824 YP_006874977.1 two component transcriptional regulator, winged helix family BAC0125 Protein 3e-43 47
Emtol_3824 YP_006874977.1 two component transcriptional regulator, winged helix family BAC0308 Protein 1e-38 45
Emtol_3824 YP_006874977.1 two component transcriptional regulator, winged helix family BAC0197 Protein 1e-39 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Emtol_3824 YP_006874977.1 two component transcriptional regulator, winged helix family VFG0596 Protein 6e-37 43