Gene Information

Name : Emtol_2459 (Emtol_2459)
Accession : YP_006873622.1
Strain : Emticicia oligotrophica DSM 17448
Genome accession: NC_018748
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2550235 - 2551014 bp
Length : 780 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: lby:Lbys_1633

DNA sequence : 
TTGCTGTTCTATCATTTACGTAGGTATTTACAATTATACCTTCATTTTCTTCGTTTATCTCTAAATTTTTCTAATTTTGG
CGTAAATCCAATCGGTATCGGTATGAAAATATTAGTAATAGAAGACGAAGCCAAGACCTTGCAATTAATCAAACAAGGTC
TTGAAGAGCAACAATGGGAAGTTGATGTGGCATACGATGGATTGATTGGTCTACAACTCGCAACTCGCACAAATTACACC
ATTATCATTTCAGATATTATCTTGCCCGGTATCAGTGGTCTTGAACTTTGTAAGCAACTTCGCACCAAAGGCGTTGCATC
ACCTATTTTACTGTTAACTGCACTAGGTACAACAGATGATAAAATTGTTGGCCTCGATGCTGGTGCTGATGATTATTTGG
TTAAACCTTTCGAATTTAGGGAGTTACTTGCACGAATTCGTGCCTTAACTCGCCGTAATACTGGAAGCGTTCAAACTGCC
AATCTTTTAAAATTTGCCGACCTCGAAATGGACTTAGATTCTAAAACTGTAAGTCGCAGCGACAAGCCAATTGTACTTAC
GGCCAAAGAGTTTGCTTTACTTGAATACTTCATCAAGCACCAAGGAAGAGTGATTTCGAAAGTAGAATTAGCTGAAAAAA
TATGGGATGTAACCTTCGATACAGGCACCAATGTGATTGAAGTTTATGTGAATTTTCTTCGCAAGAAAATCGACAAAGAT
TTCGAACCAAAACTTCTTCACACGCACATAGGTATGGGTTATGTATTGAAGAAACCATGA

Protein sequence : 
MLFYHLRRYLQLYLHFLRLSLNFSNFGVNPIGIGMKILVIEDEAKTLQLIKQGLEEQQWEVDVAYDGLIGLQLATRTNYT
IIISDIILPGISGLELCKQLRTKGVASPILLLTALGTTDDKIVGLDAGADDYLVKPFEFRELLARIRALTRRNTGSVQTA
NLLKFADLEMDLDSKTVSRSDKPIVLTAKEFALLEYFIKHQGRVISKVELAEKIWDVTFDTGTNVIEVYVNFLRKKIDKD
FEPKLLHTHIGMGYVLKKP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-34 46
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 6e-34 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Emtol_2459 YP_006873622.1 two component transcriptional regulator, winged helix family BAC0111 Protein 4e-45 50
Emtol_2459 YP_006873622.1 two component transcriptional regulator, winged helix family BAC0083 Protein 2e-39 50
Emtol_2459 YP_006873622.1 two component transcriptional regulator, winged helix family BAC0347 Protein 6e-41 48
Emtol_2459 YP_006873622.1 two component transcriptional regulator, winged helix family BAC0638 Protein 2e-32 48
Emtol_2459 YP_006873622.1 two component transcriptional regulator, winged helix family BAC0308 Protein 1e-36 46
Emtol_2459 YP_006873622.1 two component transcriptional regulator, winged helix family BAC0125 Protein 4e-38 45
Emtol_2459 YP_006873622.1 two component transcriptional regulator, winged helix family BAC0197 Protein 4e-37 43
Emtol_2459 YP_006873622.1 two component transcriptional regulator, winged helix family AE016830.1.gene1681. Protein 1e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Emtol_2459 YP_006873622.1 two component transcriptional regulator, winged helix family VFG0596 Protein 4e-35 46
Emtol_2459 YP_006873622.1 two component transcriptional regulator, winged helix family VFG1390 Protein 5e-40 41