Gene Information

Name : Ngar_c25070 (Ngar_c25070)
Accession : YP_006863087.1
Strain : Candidatus Nitrososphaera gargensis enrichment culture Ga9.2
Genome accession: NC_018719
Putative virulence/resistance : Resistance
Product : ABC efflux transporter, ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1953341 - 1954054 bp
Length : 714 bp
Strand : +
Note : -

DNA sequence : 
ATGAACACGAATAACGGAAGCGACGATTCGGTCGTTCTCAAGGTTGAAAACATTGTCAAGATATTCGAGTCTGCGGCCGG
CAGGGTCGCGGCTCTTCGCGGAGTGAACCTTTCGATAAGGAAGGGCGAGTTCGTCTCTATAGTGGGGCCCTCGGGCAGCG
GCAAGTCGACGCTGCTCAACATGATAGGGGCGCTTGACCGGCCCACCTCAGGCAGGGTGATAATAAACGGCGTCGACGTA
TTTTCGCTTTCAGACGGCGAGCTTGCCACAATGAGGAACCACCTTATCGGCTTTATCTTCCAGTCATACAACCTGATAAA
CAGGACAACCGTCCTCAAGAATGTCGAGCTCCCTGCCATACTATCTGGCATGGACGGCAGCAAAATGCAACAGCGCGCCA
TAAAGCTCCTTGACGTCTTGGGCATAAGCAACAAGGCAGACTTCAAGCCCACCAGTCTGAGCGGAGGGCAGCAGCAGAGG
GTCGCAATAGCAAGGGCGCTCATGAACGACCCCGCGATAATACTTGCAGACGAGCCGACAGGCAACCTCGACACAAAGAC
AGGGAATGAAGTGTTCGACCTGCTCAAGATGCTGTCAAACAAGTTCAGGCGCACTATAGTGATGGTGACGCATAACCCCG
AGCTTGCAGAAGCAACCGACAGGGCAATCTATATCCGCGACGGCACGGTGGAAAAGGAGGTCGCATACCACTAA

Protein sequence : 
MNTNNGSDDSVVLKVENIVKIFESAAGRVAALRGVNLSIRKGEFVSIVGPSGSGKSTLLNMIGALDRPTSGRVIINGVDV
FSLSDGELATMRNHLIGFIFQSYNLINRTTVLKNVELPAILSGMDGSKMQQRAIKLLDVLGISNKADFKPTSLSGGQQQR
VAIARALMNDPAIILADEPTGNLDTKTGNEVFDLLKMLSNKFRRTIVMVTHNPELAEATDRAIYIRDGTVEKEVAYH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-31 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-32 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-32 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-32 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ngar_c25070 YP_006863087.1 ABC efflux transporter, ATP-binding protein CP001581.1.gene598.p Protein 1e-46 52
Ngar_c25070 YP_006863087.1 ABC efflux transporter, ATP-binding protein CP001581.1.gene798.p Protein 2e-47 50
Ngar_c25070 YP_006863087.1 ABC efflux transporter, ATP-binding protein NC_012469.1.7686878. Protein 5e-46 48
Ngar_c25070 YP_006863087.1 ABC efflux transporter, ATP-binding protein NC_008702.1.4606598. Protein 6e-39 45