Gene Information

Name : C380_18475 (C380_18475)
Accession : YP_006856027.1
Strain : Acidovorax sp. KKS102
Genome accession: NC_018708
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4016997 - 4018277 bp
Length : 1281 bp
Strand : +
Note : COG1593 TRAP-type C4-dicarboxylate transport system, large permease component

DNA sequence : 
ATGACCGTTTTTATCTTCCTCGGCTCCCTGCTGGCCGCCATGGCCATTGGCGTGCCGATTGCCTACGCGCTGCTGGTGTC
CGGCGTCGCCCTCATGTGGCACCTGGACCTGTTTGACGCACAGATCCTGGCGCAGAACGTGATCAACGGCGCCGACAGCT
TTCCGCTGCTGGCGGTGCCCTTCTTCATGCTGGCGGGCGAAATCATGAACGTGGGTGGGCTGTCGCAGCGCATCGTCAAG
CTCGCGCTCACGCTGGTCGGGCACAAGCGCGGCGGGCTGGGCTTTGTGGCTATCCTGGCCGCCTGCATGCTGGCGGCGCT
GTCGGGTTCGGCCGTGGCCGACACGGCAGCACTGGCAGCCCTGCTGCTGCCCATGATGGTGAAGGCGGGGCACGACAAGG
CGCGCGCGGGCGGGCTGATTGCCTCGGCCGGCATCATTGCGCCGGTCATTCCGCCTTCCATCGGCTTCGTGGTGTTTGGC
GTGGCAGCCAATGTGTCGATCAGCAAGCTGTTCCTGGCGGGCATCGTCCCGGGCCTGCTGATGGGCCTCGCGATTGCGGT
CACCTGGTACTGGGTGTCGCAGCGCGAAAACGTCACGCCGCCGCCCAAGGCCTCCACGGCCGAGAAGCTGCAGGCGCTCA
AGGAATCGACCTGGGCGTTGTTCCTGCCCGTCATCGTGATTGTGGGCTTGAAGATGGGCGTGTTCACGCCCACAGAGGCG
GCGGCGGTGGCTGCGGTTTACGCCCTGTTTGTGGCAACGGTGGTGTACCGCGAGCTGCACTGGCGCCAGCTGACCGAGGT
GTTCACCAGCGCCGCCAAAACTACGGCGGTGATCATGTTCCTGGTGGCGGCCGCCATGGTCAGCGCCTGGCTCATCACCG
TGGCCGACATCCCGCGCCAGCTGGTGGGCCTGCTCAAGCCGCTGATGGAGCACCCCACGCTGCTGCTCATCGCCATCATG
GTGCTGGTGATGGCCGTGGGCACCGCCATGGACATGACACCCACCATCCTCATCCTGACGCCCGTGCTGATGCCGGTGGT
GAAGGCTGCGGGCATCGACCCGGTCTACTTCGGCGTGCTGTTCATCATCAACAACGCCATCGGGCTCATCACCCCGCCCG
TGGGCACGGTGCTGAACGTGGTGGCCGGAGTGGGCAAGATGCGCATGGATGACGTGACGCGGGGCGTGATTCCGTTCATG
GTGGCGCAGTTCGCGGTGATGTTCTTGATGGTGCTGTTTCCGTCGCTGGTGCTGGTGCCGATGCGGTGGTTTACGGGATG
A

Protein sequence : 
MTVFIFLGSLLAAMAIGVPIAYALLVSGVALMWHLDLFDAQILAQNVINGADSFPLLAVPFFMLAGEIMNVGGLSQRIVK
LALTLVGHKRGGLGFVAILAACMLAALSGSAVADTAALAALLLPMMVKAGHDKARAGGLIASAGIIAPVIPPSIGFVVFG
VAANVSISKLFLAGIVPGLLMGLAIAVTWYWVSQRENVTPPPKASTAEKLQALKESTWALFLPVIVIVGLKMGVFTPTEA
AAVAAVYALFVATVVYRELHWRQLTEVFTSAAKTTAVIMFLVAAAMVSAWLITVADIPRQLVGLLKPLMEHPTLLLIAIM
VLVMAVGTAMDMTPTILILTPVLMPVVKAAGIDPVYFGVLFIINNAIGLITPPVGTVLNVVAGVGKMRMDDVTRGVIPFM
VAQFAVMFLMVLFPSLVLVPMRWFTG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 3e-47 41
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 3e-47 41
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 2e-47 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
C380_18475 YP_006856027.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 1e-47 41