Gene Information

Name : C380_00965 (C380_00965)
Accession : YP_006852557.1
Strain : Acidovorax sp. KKS102
Genome accession: NC_018708
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 199015 - 200295 bp
Length : 1281 bp
Strand : +
Note : COG1593 TRAP-type C4-dicarboxylate transport system, large permease component

DNA sequence : 
ATGACCATCGCGGTTTTTCTTGCGTCGCTGCTGCTGGCGATGGCCATCGGCATGCCTATTTCCTTCGCGTTGTTGGCCAG
TGGCGTGGCCCTCATGTGGCAGTTGGACCTGTTCGATGCGCAGATCCTCATCCAGAACCTGATCGGCGGGGCCGACAGTT
TTCCGCTGCTGGCCGTGCCTTTCTTCATGCTGGCCGGCGAAATCATGAATGTGGGCGGGCTGTCCAAACGCATCGTCAAC
CTGGCGCTGTCGCTGGTCGGCCACGTGCGCGGCGGCCTGGGCTACGTGACCATCATGGCCGGTTGTCTGCTGTCCGCGCT
GTCCGGTTCGGCCGTGGCTGACGCGGCGGCGCTCACGGCACTGCTGCTCCCCATGATGGTGAAGGCCGGGCACGACAAGG
CCCAGGCTGGCGGCCTGATTGCAGCCACAGGCATCATCGGCCCGGTCATCCCGCCGAGCATCGGGCTCGTCATCTTCGGC
GTAGCGGCCAACGTGTCCATCTCCAAGCTGTTCATGGCGGCCATCGTGCCGGGCCTGCTGATCGGCGGAGCTTTGTGGGT
GACCTGGGCCTGGCTGGTGCGGCGTGAAAAGATCCAGCCGCCGCCGCGCAAGTCCATGCGCGAAGTCCTGGCCGCTGCGC
GCGAGGCCAGCTGGGCGCTGCTGCTGCCGATCATCATCCTCGTCGGCCTGCGCATGGGCGTGTTCACGCCGACGGAAGCC
GCCGTGGTGGCCGCAGTCTATGCCTTCGTGGTGGCGACCTTCGTGTACCGCGAACTCACGCTGCGCCAGCTTTACCGCGT
CTTCGTGGGTGCTGCCAAGACCAGCGCCATCGTGATGTTCCTGATCGCCGCCGCCATGGTGAGCGCCTGGCTCATCACCG
TGGCCGACCTGCCCTCCAAGGTGGTGGGCCTGCTGGAGCCCTTCATGGGCAACAAGATTCTGCTGATGGCCGCCATCATG
GTGCTGGTGATGGTCGTCGGCACGGCGATGGACATGACGCCCACCATCCTGATCCTCACGCCCATCCTGATGCCGGTGGT
CAACGCGGCGGGCATCGATCCGGTGTATTTCGGCGTGATGTTCATCATCAATAACTCCATCGGCCTGATCACGCCGCCCG
TGGGCGTGGTGCTGAACGTGGTGGCCGGCGTGGGCAAGATGCGCATGGACGATGTCACGCGCGGCGTGCTGCCCTTCATG
CTGGCCGAGTTCGCGGTCATGTTCCTGATGATCTTCTTCCCGATCCTGGTCACGGGGCCTGCGCGCTGGTTCCATGGGTG
A

Protein sequence : 
MTIAVFLASLLLAMAIGMPISFALLASGVALMWQLDLFDAQILIQNLIGGADSFPLLAVPFFMLAGEIMNVGGLSKRIVN
LALSLVGHVRGGLGYVTIMAGCLLSALSGSAVADAAALTALLLPMMVKAGHDKAQAGGLIAATGIIGPVIPPSIGLVIFG
VAANVSISKLFMAAIVPGLLIGGALWVTWAWLVRREKIQPPPRKSMREVLAAAREASWALLLPIIILVGLRMGVFTPTEA
AVVAAVYAFVVATFVYRELTLRQLYRVFVGAAKTSAIVMFLIAAAMVSAWLITVADLPSKVVGLLEPFMGNKILLMAAIM
VLVMVVGTAMDMTPTILILTPILMPVVNAAGIDPVYFGVMFIINNSIGLITPPVGVVLNVVAGVGKMRMDDVTRGVLPFM
LAEFAVMFLMIFFPILVTGPARWFHG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 3e-28 42
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 3e-28 42
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 2e-28 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
C380_00965 YP_006852557.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 1e-28 42