Gene Information

Name : C380_05840 (C380_05840)
Accession : YP_006853519.1
Strain : Acidovorax sp. KKS102
Genome accession: NC_018708
Putative virulence/resistance : Virulence
Product : two-component response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1277102 - 1277788 bp
Length : 687 bp
Strand : +
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGAAAATTCTTCTCATCGAAGACGAAGTGAAGCTGGCCGAATACCTGCGAAAGGGTCTTGGGGAAGTCGGTTACGTGGT
GGATGTTGCGCACAACGGGGTAGACGGTTTGCACATGGCGCTGGAAGGCGGACATGACCTGCTTGTGCTCGACGCCATGC
TGCCGGGCATCGACGGCTTCAGCTTGCTGACCGCTTTTCGTAAATCCAGGCAGACACCGGTACTGATGCTGACGGCCCGG
GTCAGCGTGGAGGACCGGGTACTGGGACTGCAAACCGGCGCAGACGATTACCTGGTCAAGCCCTTTGCGTTTTCCGAACT
GAATGCCCGCATCCAGGTCCTGCTCAGGCGTACCCAGGGCGCGAGGGACACATCCGAACCCGCGCAGCTGCGCCTGGCTG
ACCTCGAAGTGGACTTGGTACGGCGCAAAGCCTCCAGGAGTGGCCAACGGCTGGATCTGACATCCAAGGAGTTCCTGCTT
TTGACGCTGTTCCTACGGCGCAACGGTGAGGTGCTGTCTCGCACCGAGATTGCCGAACAGGTGTGGGACATGAACTTCGA
CAGTGACACGAACGTTGTGGAGGTCGCGATACGTCGCCTGCGCAGCAAGTTGGACGTTCCTTTTGAGAGACCACTGCTTC
ACACCATCAGGGGCATGGGCTACGTCATGGAAGAGCGCAACGCATGA

Protein sequence : 
MKILLIEDEVKLAEYLRKGLGEVGYVVDVAHNGVDGLHMALEGGHDLLVLDAMLPGIDGFSLLTAFRKSRQTPVLMLTAR
VSVEDRVLGLQTGADDYLVKPFAFSELNARIQVLLRRTQGARDTSEPAQLRLADLEVDLVRRKASRSGQRLDLTSKEFLL
LTLFLRRNGEVLSRTEIAEQVWDMNFDSDTNVVEVAIRRLRSKLDVPFERPLLHTIRGMGYVMEERNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 9e-56 53
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-55 52

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
C380_05840 YP_006853519.1 two-component response regulator BAC0125 Protein 3e-60 58
C380_05840 YP_006853519.1 two-component response regulator BAC0197 Protein 4e-61 58
C380_05840 YP_006853519.1 two-component response regulator BAC0083 Protein 1e-56 56
C380_05840 YP_006853519.1 two-component response regulator BAC0638 Protein 4e-51 56
C380_05840 YP_006853519.1 two-component response regulator BAC0111 Protein 2e-58 55
C380_05840 YP_006853519.1 two-component response regulator BAC0308 Protein 6e-53 53
C380_05840 YP_006853519.1 two-component response regulator BAC0347 Protein 9e-52 51
C380_05840 YP_006853519.1 two-component response regulator HE999704.1.gene1528. Protein 2e-32 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
C380_05840 YP_006853519.1 two-component response regulator VFG0596 Protein 4e-56 53
C380_05840 YP_006853519.1 two-component response regulator VFG1389 Protein 1e-36 46
C380_05840 YP_006853519.1 two-component response regulator VFG1390 Protein 1e-40 44