Gene Information

Name : capL (Q91_0701)
Accession : YP_006837242.1
Strain : Cycloclasticus sp. P1; MCCC 1A01040
Genome accession: NC_018697
Putative virulence/resistance : Virulence
Product : nucleotide sugar dehydrogenase subfamily
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 732734 - 733999 bp
Length : 1266 bp
Strand : +
Note : -

DNA sequence :
ATGACATTTAATGTCGCCGTGATAGGCCTTGGTTATGTTGGTTTGCCATTAGCCGTTGAGTTGGGTAAACAGTTTCCAAC
GGTTGGCTTTGATATTGATAATGAGCGTATTTCTGCATTACATAAAGGCTCTGATGTTACCTTGGAAATATCAGCTGAAG
AGATCAGTGCTGCGAAGCAATTGAGATTTACAGCAAAGGCAGATGAAATATCGGCTGCGAATATCTACATTATTACGGTT
CCCACGCCGATAGATAATGGTAATAACCCAAATTTAACACCGATTAAAGAAGCGACAACAGTGGTGGCTAACTACCTGGG
CAAAGGGGATGTTGTTATCTATGAGTCTACAGTGTACCCGGGGGCAACAGAAGAGGTTTGTGTGCCAATTCTTAGGCAGA
TATCAGGGCTGGCATATAACGAAGAGTTCTTTTGTGGTTATAGTCCCGAACGCATTAACCCGGGGGATAAAACACGTAGT
TTAACGTCTATTGTTAAAGTAACATCTGGCTCAACGCCGGATGCCGCAGCGCTAGTGGATCAGCTTTACCAGTCAATTAT
TTCAGCCGGCACTTACAAGGTTAGTAGCATCAAAGTGGCTGAAGCATCCAAAGTTATTGAGAATACACAACGCGATATTA
ATATAGCCCTTATGAACGAATTGGCGCATATTTTTAGCCGTATTGGTATAGATACAGAAGAAGTACTTGAGGCTGCAGGG
ACAAAGTGGAACTTCTTACCCTTTAGGCCAGGTTTAGTTGGCGGGCACTGTATTGGAGTTGATCCATATTATTTGGCGCA
TAAAGCAGAAACACTTGGGTATCACCCGCAATTGATTGCTGCTGGGCGACGGATTAATGACAAAATGGGGTCGTTTGTAG
TCAGTGAAGTGCTGAAACTTATGGCCAAAAAGCGTTTGAGTATTGTTGGTGCTAACGTGTTAATAATGGGTTTATCGTTT
AAAGAAAATTGCCCAGACCTACGAAATACCCGTGTAATAGGCATGGTTGAGGAGCTTGAATCATACAATGCTAACGTCGA
GGTGTACGACCCTTGGGTAAACGTTGATGACTTAAAAAATGAACAACAACTTAAGGTGATAAAGCAGCCGACTAAAGGAT
CGTACGATGCCATTATTATTGCTGTGTCGCACGATCAATTTAAAGCCCTGGGTGTGAATGCTGTTAGAGCCTTTGGGAAG
CCTAATCACGTGTTGTATGACATCAAGTATTTGTTTGCTTCAAATGAGACAGATGGGCGGTTGTAA

Protein sequence :
MTFNVAVIGLGYVGLPLAVELGKQFPTVGFDIDNERISALHKGSDVTLEISAEEISAAKQLRFTAKADEISAANIYIITV
PTPIDNGNNPNLTPIKEATTVVANYLGKGDVVIYESTVYPGATEEVCVPILRQISGLAYNEEFFCGYSPERINPGDKTRS
LTSIVKVTSGSTPDAAALVDQLYQSIISAGTYKVSSIKVAEASKVIENTQRDINIALMNELAHIFSRIGIDTEEVLEAAG
TKWNFLPFRPGLVGGHCIGVDPYYLAHKAETLGYHPQLIAAGRRINDKMGSFVVSEVLKLMAKKRLSIVGANVLIMGLSF
KENCPDLRNTRVIGMVEELESYNANVEVYDPWVNVDDLKNEQQLKVIKQPTKGSYDAIIIAVSHDQFKALGVNAVRAFGK
PNHVLYDIKYLFASNETDGRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 7e-128 58
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 7e-128 58
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 3e-96 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
capL YP_006837242.1 nucleotide sugar dehydrogenase subfamily VFG0431 Protein 3e-128 58