Gene Information

Name : Q91_1297 (Q91_1297)
Accession : YP_006837837.1
Strain : Cycloclasticus sp. P1; MCCC 1A01040
Genome accession: NC_018697
Putative virulence/resistance : Virulence
Product : dna repair radc-like protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1374699 - 1375190 bp
Length : 492 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAACCGTTAAACCTTCGAATGAAATGTATTCTACCGAAACGGCATTCGAGCAGGAAAACCAACTGATTGCTGAAGC
CAAACACTTGCTCTATGCACGACTGAAAACCCGTGACCAGGTGTTTAGTTCCCCGCATGAAGTACGCGACTATCTGCGCT
TACAGCTAGCAGGCCAGCAGCGAGAAGTATTTAGCTGCCTGTTTGTTGATAGCCAATATAGACTGATTGAGTATCGGGAA
ATGTTTGCGGGCACCATTGATGGTTGCAGTGTTTATCCCCGTGAAGTGGTCAAGGCCGCTTTGCAGGTGAATGCTGCTGC
AGTGATTTTTGCTCACAATCATCCATCTGGAGTGGCTGAGCCCAGTCAGAGTGATAGAAATATCACACAACGGCTGAAAG
AGGCTTTGTCATTGATAGATATCCGGGTACTGGATCACTTTATAGTAGGTGATGAGACAGTGGAATCGTTTGCTGAGCGA
GGGTTGCTTTAG

Protein sequence : 
MKTVKPSNEMYSTETAFEQENQLIAEAKHLLYARLKTRDQVFSSPHEVRDYLRLQLAGQQREVFSCLFVDSQYRLIEYRE
MFAGTIDGCSVYPREVVKAALQVNAAAVIFAHNHPSGVAEPSQSDRNITQRLKEALSLIDIRVLDHFIVGDETVESFAER
GLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-35 60
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-35 60
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-35 60
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 3e-25 55
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 4e-35 52
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 8e-26 52
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 2e-26 51
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 2e-26 51
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 2e-26 51
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 5e-26 50
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 4e-26 50
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 3e-26 50
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 4e-26 50
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 4e-26 50
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 2e-25 50
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 6e-26 50
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 4e-31 50
unnamed AAL08475.1 unknown Not tested SRL Protein 2e-26 50
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 5e-26 48
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 4e-26 48
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 1e-26 48
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 6e-26 48
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 4e-26 48
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 7e-26 47
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 3e-23 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Q91_1297 YP_006837837.1 dna repair radc-like protein VFG1119 Protein 6e-36 60
Q91_1297 YP_006837837.1 dna repair radc-like protein VFG1617 Protein 3e-26 52
Q91_1297 YP_006837837.1 dna repair radc-like protein VFG0660 Protein 6e-27 51
Q91_1297 YP_006837837.1 dna repair radc-like protein VFG1678 Protein 2e-26 50
Q91_1297 YP_006837837.1 dna repair radc-like protein VFG1066 Protein 1e-26 50
Q91_1297 YP_006837837.1 dna repair radc-like protein VFG1528 Protein 2e-26 48