Gene Information

Name : rpmJ (MC28_4698)
Accession : YP_006831519.1
Strain : Bacillus thuringiensis MC28
Genome accession: NC_018693
Putative virulence/resistance : Resistance
Product : 50S ribosomal protein L36
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4575170 - 4575874 bp
Length : 705 bp
Strand : -
Note : -

DNA sequence : 
ATGGGAAAGAAAATTTTAGTAGTTGATGATGAAAAGCCGATTGCAGACATTTTGAAGTTCAACCTAGAAAAAGAGGGTTT
TGAAATTGTAATGGCACATGATGGTGATGAAGCAATTGAGAAAGCTAATGAAGAACAGCCAGATATGGTTTTATTAGATA
TTATGCTACCAGGAAAAGATGGTTTAGAGGTTTGTCGTGAAATACGTAAAAACTCAGAAATGCCGATTATTATGCTTACA
GCGAAGGACTCTGAAATTGATAAGGTATTAGGGCTTGAGCTTGGAGCAGATGATTATGTAACGAAGCCATTTAGTACGAG
GGAATTACTTGCTCGTGTGAAGGCGAATTTACGCCGCCATCAACAAGGTGGTGCAGCAGAAAAAGAAGAAAATACTGAAA
TGGTTATTGGACCAATTATTATTAATCCAAATGCTTATAGTGTAACAAAGCGTGAGGAAAATATTGAGCTTACACATCGT
GAATTTGAATTGCTACATTATTTAGCAAAACATTTAGGACAAGTTATGACACGTGAACATTTATTGCAAACAGTTTGGGG
TTATGATTATTTTGGAGATGTGCGTACAGTGGATGTAACAGTACGTCGTTTACGTGAAAAAATTGAAGATAATCCAAGTC
ATCCTACTTTAATTGTAACTAGACGTGGGGTAGGGTATTACTTGCGTGACCCAGAGCAGGAATAA

Protein sequence : 
MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRKNSEMPIIMLT
AKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEENTEMVIGPIIINPNAYSVTKREENIELTHR
EFELLHYLAKHLGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-37 43
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 4e-37 43
nisR2 YP_006309922.1 NisR Not tested FWisland_1 Protein 2e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_012469.1.7685629. Protein 3e-64 67
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_003923.1003749.p0 Protein 2e-57 56
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_002758.1121668.p0 Protein 2e-57 56
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_009641.5332272.p0 Protein 2e-57 56
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_013450.8614421.p0 Protein 2e-57 56
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_007793.3914279.p0 Protein 2e-57 56
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_002952.2859905.p0 Protein 3e-57 56
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_007622.3794472.p0 Protein 1e-57 56
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_002745.1124361.p0 Protein 2e-57 56
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_009782.5559369.p0 Protein 2e-57 56
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_002951.3237708.p0 Protein 2e-57 56
rpmJ YP_006831519.1 50S ribosomal protein L36 HE999704.1.gene2815. Protein 3e-48 51
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_012469.1.7686381. Protein 2e-45 50
rpmJ YP_006831519.1 50S ribosomal protein L36 AE016830.1.gene1681. Protein 1e-48 48
rpmJ YP_006831519.1 50S ribosomal protein L36 CP004022.1.gene3215. Protein 1e-35 48
rpmJ YP_006831519.1 50S ribosomal protein L36 AE000516.2.gene3505. Protein 2e-39 46
rpmJ YP_006831519.1 50S ribosomal protein L36 HE999704.1.gene1528. Protein 8e-32 45
rpmJ YP_006831519.1 50S ribosomal protein L36 AF155139.2.orf0.gene Protein 9e-39 45
rpmJ YP_006831519.1 50S ribosomal protein L36 FJ349556.1.orf0.gene Protein 5e-40 44
rpmJ YP_006831519.1 50S ribosomal protein L36 CP000647.1.gene4257. Protein 1e-32 44
rpmJ YP_006831519.1 50S ribosomal protein L36 CP001138.1.gene4273. Protein 1e-32 44
rpmJ YP_006831519.1 50S ribosomal protein L36 CP000034.1.gene3834. Protein 1e-33 44
rpmJ YP_006831519.1 50S ribosomal protein L36 BAC0533 Protein 1e-32 44
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_002695.1.915041.p Protein 1e-33 44
rpmJ YP_006831519.1 50S ribosomal protein L36 AF162694.1.orf4.gene Protein 2e-34 43
rpmJ YP_006831519.1 50S ribosomal protein L36 AM180355.1.gene1830. Protein 8e-38 43
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_002758.1121390.p0 Protein 7e-37 43
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_010079.5776364.p0 Protein 7e-37 43
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_002952.2859858.p0 Protein 7e-37 43
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_007622.3794948.p0 Protein 7e-37 43
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_003923.1003417.p0 Protein 7e-37 43
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_013450.8614146.p0 Protein 7e-37 43
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_002951.3238224.p0 Protein 7e-37 43
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_007793.3914065.p0 Protein 7e-37 43
rpmJ YP_006831519.1 50S ribosomal protein L36 BAC0125 Protein 1e-31 42
rpmJ YP_006831519.1 50S ribosomal protein L36 DQ212986.1.gene4.p01 Protein 3e-36 42
rpmJ YP_006831519.1 50S ribosomal protein L36 AE015929.1.gene1106. Protein 3e-32 42
rpmJ YP_006831519.1 50S ribosomal protein L36 CP004022.1.gene1676. Protein 9e-32 42
rpmJ YP_006831519.1 50S ribosomal protein L36 BAC0039 Protein 6e-34 42
rpmJ YP_006831519.1 50S ribosomal protein L36 CP000034.1.gene2186. Protein 6e-34 42
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_002695.1.916589.p Protein 5e-34 42
rpmJ YP_006831519.1 50S ribosomal protein L36 CP001918.1.gene3444. Protein 5e-33 42
rpmJ YP_006831519.1 50S ribosomal protein L36 AF130997.1.orf0.gene Protein 4e-35 41
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_014475.1.orf0.gen Protein 3e-39 41
rpmJ YP_006831519.1 50S ribosomal protein L36 EU250284.1.orf4.gene Protein 3e-35 41
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_005054.2598277.p0 Protein 3e-39 41
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_011595.7057856.p0 Protein 1e-32 41
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_010400.5986590.p0 Protein 8e-32 41
rpmJ YP_006831519.1 50S ribosomal protein L36 NC_010410.6002989.p0 Protein 1e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rpmJ YP_006831519.1 50S ribosomal protein L36 VFG1563 Protein 7e-38 43
rpmJ YP_006831519.1 50S ribosomal protein L36 VFG1702 Protein 2e-37 43
rpmJ YP_006831519.1 50S ribosomal protein L36 VFG1390 Protein 2e-38 42
rpmJ YP_006831519.1 50S ribosomal protein L36 VFG1386 Protein 2e-35 42
rpmJ YP_006831519.1 50S ribosomal protein L36 VFG1389 Protein 3e-31 42