Gene Information

Name : rpsE (MC28_4691)
Accession : YP_006831512.1
Strain : Bacillus thuringiensis MC28
Genome accession: NC_018693
Putative virulence/resistance : Unknown
Product : 30S ribosomal protein S5
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4568370 - 4568873 bp
Length : 504 bp
Strand : -
Note : -

DNA sequence :
ATGTTTGTAAGGTGGGGAATAAATGTGAATATCTCGATTATTTCAATCGGAAAATTAAAGGAAAAGTATTTAAAACAAGG
TATAGCAGAATATTTAAAACGATTATCTGCGTACGCAAAAGTAGAAGTAATTGAATTGCCAGATGAAAAAGCACCAGAAA
ATTTAAGTGAAGCCGAAATGTTAATTGTAAAAGAAAAAGAAGGTATACGTATACTGGATAAAATTTCTGATGATACGCAC
GTGATCGCATTAGCGATAGAAGGAAAACAAAAGTCATCAGAAGAATTTGCAGTAAGCCTAGATCGTCTTGCTACATATGG
AAAGAGTAAAGTTGCCTTTGTAATTGGTGGATCACTTGGACTAAGTTCAGAAGTAATGAAGCGTTCCAATGAATCTCTTT
CTTTTTCAAAAATGACATTACCACACCAATTAATGCGATTAGTATTGCTTGAGCAAGTGTATAGAGCGTTTCGTATTAAT
CGTGGTGAACCATATCATAAGTAA

Protein sequence :
MFVRWGINVNISIISIGKLKEKYLKQGIAEYLKRLSAYAKVEVIELPDEKAPENLSEAEMLIVKEKEGIRILDKISDDTH
VIALAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSNESLSFSKMTLPHQLMRLVLLEQVYRAFRIN
RGEPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 1e-39 64
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 5e-40 63
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 5e-40 63
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 8e-40 63
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 5e-40 63
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 8e-40 63
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 5e-40 63
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 5e-40 63
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 6e-40 63
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 5e-40 63
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 5e-40 63
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 5e-40 63
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 5e-40 63
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 5e-40 63
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 6e-36 62
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 2e-38 61
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-38 61
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 2e-38 60