Gene Information

Name : rpoB (MC28_4667)
Accession : YP_006831488.1
Strain : Bacillus thuringiensis MC28
Genome accession: NC_018693
Putative virulence/resistance : Virulence
Product : DNA-directed RNA polymerase subunit beta
Function : -
COG functional category : -
COG ID : -
EC number : 2.7.7.6
Position : 4539262 - 4540233 bp
Length : 972 bp
Strand : +
Note : -

DNA sequence : 
ATGGAAAAATTAATTTCGGTTGTAGTTCCTATGTACTTCGAGGAAGAAGTGGCACAGGAATGTTATAATCGTTTAAAGTC
CGTTATGCTTCAAAATAATATTAATTATGAATTTGTCTTTGTAAACGATGGTAGTATAGATCGTACAATGGACATTTTAT
CTGAGATTGCAGCAAATGATTACCGTACAAAAATTGTTGATTTTGCACGTAACTTCGGACACCAAGTAGCTGTTACAGCG
GGTATTGCTGCTGCAAAAGGTGACGCTATTGTAATTATAGATGCAGATTTACAAGATCCACCAGAAGTTATTCCTGAGCT
TATTGCCAAATGGGAAGAAGGATATGAAGTTGTTTATGCAAAACGTAAACAACGTAAAGGTGAAACTTGGTTTAAACTTT
TAACTGCTAAATATTTCTATAAATTCTTAAACTATATGTCTGATATCGATATCCCAAAAGATACAGGTGATTTCCGAATC
ATCGATCGCAAAGTTGCTGATGTGTTCAATCAAATGACAGAACGAAATCGCTTTATTCGCGGTATGATGTCTTGGGTTGG
CTTCCGCCAAACGTATGTTGAATATGAACGTGACGAGCGTTTTGCTGGTGAAACAAAATATCCATTAAAGAAAATGATTA
AATTTGCATCAGACGGTATCATTGCCTTTTCGACAAAACCGTTACGAATTGTTATGTCTTTAGGCTTATTATCAGTTCTC
ATTTCTATAATTGTCTTGCTGTATACAATTACTGTGAAAATCATCGGCGATGGTACTCAAACAGGTTGGGCATCCATTAT
GGTTGCTATTACATTCTTTAGCGGTATTCAGTTACTTGGTCTTGGAATCGTCGGTCAGTATATTGCTCGTATTTATGACG
AAAGTAAAAACCGTCCGATTTATATCGTGAAAGAAACGATCAATATTGAACAAGAAGAAGCTGCACAGAAAAAAGAAAAA
GTGAATGCATAA

Protein sequence : 
MEKLISVVVPMYFEEEVAQECYNRLKSVMLQNNINYEFVFVNDGSIDRTMDILSEIAANDYRTKIVDFARNFGHQVAVTA
GIAAAKGDAIVIIDADLQDPPEVIPELIAKWEEGYEVVYAKRKQRKGETWFKLLTAKYFYKFLNYMSDIDIPKDTGDFRI
IDRKVADVFNQMTERNRFIRGMMSWVGFRQTYVEYERDERFAGETKYPLKKMIKFASDGIIAFSTKPLRIVMSLGLLSVL
ISIIVLLYTITVKIIGDGTQTGWASIMVAITFFSGIQLLGLGIVGQYIARIYDESKNRPIYIVKETINIEQEEAAQKKEK
VNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gtrBI AAF09026.1 GtrBI Not tested SHI-O Protein 2e-39 42
ESA_03027 YP_001439092.1 hypothetical protein Not tested Not named Protein 2e-40 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rpoB YP_006831488.1 DNA-directed RNA polymerase subunit beta VFG0670 Protein 6e-40 42