Gene Information

Name : B5T_03184 (B5T_03184)
Accession : YP_006821794.1
Strain : Alcanivorax dieselolei B5
Genome accession: NC_018691
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3554553 - 3555050 bp
Length : 498 bp
Strand : +
Note : -

DNA sequence :
ATGGCCAAAGATGTCCCTTCCACGTGCGAGGACAGCGTACTTCACCGCGTGCCGTGTTATCTGTCCCGCGACGAACTGAT
TAACGCCGCCTCGGCACTGTTGCTGGAAGATCTGGTCAGTCAGGACCGCCTGTCCGATCCCGAGGAGGCGGTGGCCTTCC
TCAAGCTGACCCTGGCGCAGCACCCCACCGAGCACTTCGGCGTGCTGTTCCTGACCAACAAGAACCGGGTGATCGCCTAT
GAGCACCTTTTTCAGGGGTCCATCGACACCACCACCATCCATCCCCGAGTGATCGCCCAACGGGCGTTGGCGCTGAACGC
GGCGGCGGTGATCCTGGCCCACAATCATCCGTCCGGTTGTTCCCAGCCCTCGACGGCGGATCGCACCAGTACCCGCCGGA
TGACGCAGGCGTTGGAGCTGGTGGACATCCGGGTCCTGGATCATCTGATCGTGACGCCCACCGAATGGACCAGTCTCGGC
CGTCTCGGGTTTCTTTAA

Protein sequence :
MAKDVPSTCEDSVLHRVPCYLSRDELINAASALLLEDLVSQDRLSDPEEAVAFLKLTLAQHPTEHFGVLFLTNKNRVIAY
EHLFQGSIDTTTIHPRVIAQRALALNAAAVILAHNHPSGCSQPSTADRTSTRRMTQALELVDIRVLDHLIVTPTEWTSLG
RLGFL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 3e-21 51
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 2e-14 49
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 2e-15 48
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 3e-15 48
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 2e-15 48
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 2e-15 48
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 3e-15 48
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 3e-15 48
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 3e-14 47
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 8e-15 47
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 2e-14 47
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 8e-15 47
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 1e-14 47
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 6e-15 47
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 2e-14 47
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 2e-15 46
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 1e-15 46
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 2e-15 46
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 2e-15 45
unnamed AAL08475.1 unknown Not tested SRL Protein 3e-15 45
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-18 44
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-18 44
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 9e-19 44
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 3e-18 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B5T_03184 YP_006821794.1 DNA repair protein RadC VFG1528 Protein 8e-16 48
B5T_03184 YP_006821794.1 DNA repair protein RadC VFG0660 Protein 9e-16 48
B5T_03184 YP_006821794.1 DNA repair protein RadC VFG1617 Protein 5e-15 47
B5T_03184 YP_006821794.1 DNA repair protein RadC VFG1678 Protein 8e-15 47
B5T_03184 YP_006821794.1 DNA repair protein RadC VFG1066 Protein 1e-15 45
B5T_03184 YP_006821794.1 DNA repair protein RadC VFG1119 Protein 3e-19 44