Gene Information

Name : O3I_037520 (O3I_037520)
Accession : YP_006812425.1
Strain : Nocardia brasiliensis HUJEG-1
Genome accession: NC_018681
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 8414078 - 8414764 bp
Length : 687 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence :
ATGCGCATTCTGGTAGTAGACGACGATCGCGCCGTCCGCGAGTCGCTGCGCCGGTCGCTGACCTTCAACGGCTACTCCGT
CGACCTCGCGGTCGACGGGGTGGATGCCCTGGAAAAGGCAACCGATCAGCGACCGGACGCGTTGGTGTTGGACGTGATGA
TGCCGCGGATGGACGGCCTCGAGGTCTGCCGGCGGTTGCGCAGTACCGGTGACGATCTCCCCATTCTGGTTTTGACAGCA
CGGGATTCGGTGTCCGAGCGCGTTGCCGGACTCGATGCCGGTGCGGACGACTATTTGCCGAAACCCTTCGCATTGGAAGA
ATTGCTCGCCCGATTGCGCGCACTGTTGCGACGCACCACCGCCGATCCCGGCGAGACATCGGAGGCAATGACGTTCGCCG
ATTTGTCGCTGGATCCGGTGACCCGGGAGGTTTCTCGCGGCGAACGGGCGATCAGTCTCACCCGCACCGAGTTCTCGTTG
CTGGAAATGCTGATGGCCAATCCGCGCCGGGTGCTGACTCGTAGCCGCATCCTCGAGGAGGTCTGGGGTTACGACTTCCC
GACCTCGGGCAACGCGCTCGAGGTGTACATCGGATATTTGCGGCGCAAGACCGAAGCCGACGGCGAGCCCCGGCTCATCC
ACACCGTGCGCGGTGTCGGCTATGTCCTGAGGGAGACACCCCCCTAG

Protein sequence :
MRILVVDDDRAVRESLRRSLTFNGYSVDLAVDGVDALEKATDQRPDALVLDVMMPRMDGLEVCRRLRSTGDDLPILVLTA
RDSVSERVAGLDAGADDYLPKPFALEELLARLRALLRRTTADPGETSEAMTFADLSLDPVTREVSRGERAISLTRTEFSL
LEMLMANPRRVLTRSRILEEVWGYDFPTSGNALEVYIGYLRRKTEADGEPRLIHTVRGVGYVLRETPP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-31 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-31 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0083 Protein 2e-35 48
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0125 Protein 3e-34 47
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0638 Protein 1e-29 47
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene1528. Protein 8e-38 45
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0308 Protein 8e-33 44
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0197 Protein 2e-30 44
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE000516.2.gene3505. Protein 3e-34 44
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794948.p0 Protein 1e-33 41
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003417.p0 Protein 1e-33 41
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614146.p0 Protein 1e-33 41
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3238224.p0 Protein 1e-33 41
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914065.p0 Protein 1e-33 41
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121390.p0 Protein 1e-33 41
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010079.5776364.p0 Protein 1e-33 41
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859858.p0 Protein 1e-33 41
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP004022.1.gene3215. Protein 2e-24 41
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7686381. Protein 1e-33 41
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain U82965.2.orf14.gene. Protein 1e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1390 Protein 3e-83 86
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1389 Protein 6e-45 53
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1386 Protein 2e-46 52
O3I_037520 YP_006812425.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0596 Protein 8e-32 43