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Name : lysS (O3I_000295) Accession : YP_006804996.1 Strain : Nocardia brasiliensis HUJEG-1 Genome accession: NC_018681 Putative virulence/resistance : Unknown Product : lysyl-tRNA ligase Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 70587 - 73907 bp Length : 3321 bp Strand : - Note : COG2898 Uncharacterized conserved protein DNA sequence : GTGACCACCACGCAAGCCCGGCAACACCTGATCGAACCGCCAGCCGACAGACCGACCCCGCCTGTGCCGCATCGCGGGCA CGGCAGGCTGGCCGAGGTCCCGCATATCGCGGGTCTAGTGCTCGGGGTGTTCGCGGTCGCGTGTTTCCTCTGGAGCCTCT CACCCACCCTGCGCTACCTCACGCAGGTGCCCCGGCACTACATCGACAACTACTACTTCGACGCGCCGGACACGAACCTG ATGTGGGCGCTGATCGTCGGCCTGCTCGCCGGGGCGCTGGCCAGCCGGAAGCGGATCGCGTGGTGGTTGCTGCTCGGTTA CGTGTCGCTGTACGCCCTGGCCGAGGGCCTGGATTTCGCGGACACCGGCGATGTCAACGCGCTGGTCGCGATGATCGTGC ACCTCGCGGTGATCGGTGTGCTGGTCGCGGCGTGGCGTGAGTTCTACACGAAGGTGCGCCGCGGCGCGGGCTGGAAGGCG CTCGGCGTGCTCGCCGGCGGCCTGACGGTCGGTTTCCTGCTCGGCTGGGGCCTGGTCGAATTGTTCCCCGGATCGCTGCC GCAGGGCGCGCAGCGGCCCGGCTGGGCGCTGTACCGGGTGACCGCCGCGGTGCTGGTGGACAACGAACGCTTCGACGGGC ATCCGCGCCCGTTCGTGAACTTCCTGCTCGGTCTGTTCGGCGCGATCGCACTGCTGGCCGCGGTGATCATCCTGCTGCGC TCCCAGCGCGCGGCGAACGCGATGACCGGCACCGACGAATCCGCGATCCGCGGCCTGCTGGAACGCTCCGACGTCGAGGA TTCGCTCGGCTACTTCGCGACCCGCCGGGACAAGGCGGTGGTGTTCGCGCCCAGCGGCAAGGCGGCCCTCACCTATCGGG TCGAGCTGGGCGTGTGCCTGGCCAGCGGCGACCCGGTCGGCATCCGCGAGGCCTGGCCGCAGGCGATCGACGCCTGGCTG CGGCTGGCCGACCAATTCGGCTGGGCGCCCGCGGTGATGGGCGCGAGCGAACTCGGCGCCACGGCCTACCAGCGCGCGGG CCTCTCGGTGATCCGGCTCGGCGACGAAGCCATCCTGGATACCAGGACGTTCTCGCTGGCGGGCCCGGAGATGAAACCGG TGCGCCAGGCCGCGAATCGATTGCGCAAGCACGGCATCACCGTGCGGATCCGGCGGCACCGCGATATCCCGGCCGAGGAG TTCCGCGCCGTGATCGCGCGTGCCGACGCCTGGCGCGACACCGAGACCGAGCGCGGTTTCTCGATGGCGCTCGGCCGGCT CGGCGATCCGCTGGACGCCGACTGCCTCCTGGTCGAAGCGGTGAACGGACAGGATCGCGTGCTCGGCATGCTGTCGCTGG TCCCGTGGGGCCGCACCGGGGTCTCGCTGGAGCTGATGCGCCGCGACCCGAACGGTCCGAACGGCGTGATGGAGCTGATG ATCTCGCAGCTCGCACTGAACTCCGAACAGCACGGCGTCACCAAGATCTCGTTGAACTTCGCCGTGTTCCGCTCGGTGTT CGAGGAGGGCGGGCGGATCGGCGCCGGGCCGGTGCTGCGCATGTGGCGCGGTGTGCTGCTGTTCTTTTCGCGATGGTGGC AGCTGGAGGCGCTGTACCGCTCCAACGTGAAATACCAGCCGCATTGGGTACCAAGGTTTTTCCTGTTCGAGGAGCGCAGG CAACTGCCGCGGGTCGCGGTGGCCAGCGCGCTCGCCGAGGGCTTCCTGCCGCGGTTCGGGAAAGAACCGGACACGATCAC CCACACCGGCTCGCACAGCGCGGCGCCCGCGAGCATGACCGGCCTGCACGCCGACGGCAGCCCGCCCGACCTCGACCAGG TCGAGGGACAGGAACTGCTGCCGCGCCGGCCCGAACAGGTGCGGGTGCGGATGGACAAGCTGGACCGGCTCACCGCCTCC GGTGTCGAGGCATACCCGGTCGCCTACCCGCCGACCCACAGCGTCGCGGGCGCCCGGCAATCGCCGCGCGGCACCACGGT CCGGGTGTGCGGCAGGCTGCTGCGCATCCGCGACTACGGCGGCGTGATCTTCGCCGTGCTGCGTGACTGGACCGACGACA TCCAGCTGGTGATCGATCGGGACCGGGTCGGCGCCGAACGCAGCGCCGAATTCACCGAATTCTTCGACCTCGGTGACCTG ATCGAGGTCAGCGGGCAGATCGGGCGCAGCCGCCGCGGCGAGCTCTCGCTGCTCGCGGCGGACTGGCGGATGCTCGGCAA ATGCCTGCATCCCTTGCCGGACAAGTGGAAGGGCCTGTCCGATCCCGAGGCGCGAGTGCGGCAGCGCTACGTCGACATGG CGATCAACGCCGAAACCCGCGAGGTGCTCGCCAAACGCAGCGCGGTGGTCCGTTCGCTACGCGACACGTTCAACGGCTGG GGCTACCTCGAGGTGGAGACGCCGATCCTGCAGCAGGTGCACGGCGGCGCCAACGCCACCCCGTTCCTCACCCACATCAA CGCCTACGACCTCGATCTGTACCTGCGGATCGCGCCCGAGCTGTACCTGAAGCGGCTCTGCGTCGGCGGCATGGAGAAGG TTTTCGAGATCGGCCGCACCTTCCGCAACGAGGGCGTCGACTTCAGCCACAATCCCGAGTTCACCATCCTCGAGGCCTAC GAGGCGCACAGCGACTACGAGCGGATGATGCACGCCGCCCGCGAACTCATCCAGAACGCCGCCGTCGCGGCCAACGGTGC GATGGTGGCGTTGCGGCCGCAGGACGACGGCTCGTTCGAGCAGGTCGACATCTCCGGCGAGTGGGCGGTCAAAACGGTGC ACGGCGCGGTGTCCGAGGCACTCGGCACCGAGATCACCCCGGCCACCGAGGTCGAGCTGCTGCGCGAACTGTGCGACAAG GCCGAGGTGCCCTATCAGCACGGCTGGGACGCGGGCCAGGTGGTGCTGGAAATGTACGAGCACCTGGTCGAAGCGCGCAC CGAGGCGCCGACCTTCTACATCGACTTCCCCACCTCGGTGTCCCCGCTGACCCGCGCGCACCGCAGCATCGCCGGAGTCA CCGAACGCTGGGACCTGGTCGCCTGGGGCGTCGAACTCGGCACCGCCTACAGCGAACTCACCGATCCGGTGGAGCAGCGA CGCAGGCTCACCGAACAATCCATGCTCGCCGCCAACGGCGATCCGGAGGCGATGGAACTCGACGAGGACTTCCTGCAGGC CCTCGAGCACGCGATGCCGCCGACCGGCGGGCTCGGGCTCGGCGTCGACCGGGTGGTCATGCTGATCACGGGGCGCAGCA TCCGCGAGACACTCCCGTTCCCGCTGGTGAAACCGCGCTGA Protein sequence : MTTTQARQHLIEPPADRPTPPVPHRGHGRLAEVPHIAGLVLGVFAVACFLWSLSPTLRYLTQVPRHYIDNYYFDAPDTNL MWALIVGLLAGALASRKRIAWWLLLGYVSLYALAEGLDFADTGDVNALVAMIVHLAVIGVLVAAWREFYTKVRRGAGWKA LGVLAGGLTVGFLLGWGLVELFPGSLPQGAQRPGWALYRVTAAVLVDNERFDGHPRPFVNFLLGLFGAIALLAAVIILLR SQRAANAMTGTDESAIRGLLERSDVEDSLGYFATRRDKAVVFAPSGKAALTYRVELGVCLASGDPVGIREAWPQAIDAWL RLADQFGWAPAVMGASELGATAYQRAGLSVIRLGDEAILDTRTFSLAGPEMKPVRQAANRLRKHGITVRIRRHRDIPAEE FRAVIARADAWRDTETERGFSMALGRLGDPLDADCLLVEAVNGQDRVLGMLSLVPWGRTGVSLELMRRDPNGPNGVMELM ISQLALNSEQHGVTKISLNFAVFRSVFEEGGRIGAGPVLRMWRGVLLFFSRWWQLEALYRSNVKYQPHWVPRFFLFEERR QLPRVAVASALAEGFLPRFGKEPDTITHTGSHSAAPASMTGLHADGSPPDLDQVEGQELLPRRPEQVRVRMDKLDRLTAS GVEAYPVAYPPTHSVAGARQSPRGTTVRVCGRLLRIRDYGGVIFAVLRDWTDDIQLVIDRDRVGAERSAEFTEFFDLGDL IEVSGQIGRSRRGELSLLAADWRMLGKCLHPLPDKWKGLSDPEARVRQRYVDMAINAETREVLAKRSAVVRSLRDTFNGW GYLEVETPILQQVHGGANATPFLTHINAYDLDLYLRIAPELYLKRLCVGGMEKVFEIGRTFRNEGVDFSHNPEFTILEAY EAHSDYERMMHAARELIQNAAVAANGAMVALRPQDDGSFEQVDISGEWAVKTVHGAVSEALGTEITPATEVELLRELCDK AEVPYQHGWDAGQVVLEMYEHLVEARTEAPTFYIDFPTSVSPLTRAHRSIAGVTERWDLVAWGVELGTAYSELTDPVEQR RRLTEQSMLAANGDPEAMELDEDFLQALEHAMPPTGGLGLGVDRVVMLITGRSIRETLPFPLVKPR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS1 | YP_005684273.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 8e-159 | 45 |
| lysX | YP_003784331.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 8e-159 | 45 |
| lysS1 | YP_005686365.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 8e-159 | 45 |
| lysS1 | YP_005682181.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 3e-159 | 45 |
