Gene Information

Name : O3I_005530 (O3I_005530)
Accession : YP_006806043.1
Strain : Nocardia brasiliensis HUJEG-1
Genome accession: NC_018681
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1283875 - 1284549 bp
Length : 675 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
GTGCGTGTGCTGGTGGTGGAGGACGACGAGGGTCTCGGCAGCGAAATCGCCGCCGGGTTGCGCGCGGCGGGCTGCGCAGT
GGATCTGGCCCGCCTGCTCGCCGACGCCGATCTGAAGATCACCGTCAACACCTACGACGTCCTCGTCGTCGACCGCGGCC
TGCCCGACGGCGACGGCCTGCGACTCGTCGCCCACCACCGCGCGGCAGGCCTGCGGGTACCGGTATTGATGCTCACCGCA
CGCGACGGGCTCGCCGATCGCATCGCCGGCTTCGAGCACGGCGCCGACGACTACCTGGTCAAGCCGTTCGCCCTGCCCGA
ACTCGCCGCCAGGGTGCGGGCGCTGAGCCGCCGCCGCGAACACCCGGCGCCCGCGCGCATCGTGCTCGGTGACGTCGATA
TCGACCTGCCGCGACGCCGGGTGCAGCGCGCGGGCATCCTGCGCTCGCTGACGCCGAAGGAATTCGCGGTACTCGAACTG
CTCGCCACCCGCGCGGGCACCGTGGTGTCGCGCAGCGAGCTCATCGAGTGCTGCTGGGACGAGATGGCCGAGCCCGCCTC
CAATGTGGTCGACGCCGTCATCGCCCAGCTGCGCCGCAAACTCGGACCGCCGCAGGTGATCGAGACCGTGCGCGGCACCG
GGTTCATGATCGGAAGTGCAGCATTCGCACGTTGA

Protein sequence : 
MRVLVVEDDEGLGSEIAAGLRAAGCAVDLARLLADADLKITVNTYDVLVVDRGLPDGDGLRLVAHHRAAGLRVPVLMLTA
RDGLADRIAGFEHGADDYLVKPFALPELAARVRALSRRREHPAPARIVLGDVDIDLPRRRVQRAGILRSLTPKEFAVLEL
LATRAGTVVSRSELIECCWDEMAEPASNVVDAVIAQLRRKLGPPQVIETVRGTGFMIGSAAFAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-19 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
O3I_005530 YP_006806043.1 winged helix family two component transcriptional regulator Y16952.3.orf35.gene. Protein 2e-32 46
O3I_005530 YP_006806043.1 winged helix family two component transcriptional regulator U82965.2.orf14.gene. Protein 5e-31 44
O3I_005530 YP_006806043.1 winged helix family two component transcriptional regulator BAC0083 Protein 2e-28 43
O3I_005530 YP_006806043.1 winged helix family two component transcriptional regulator BAC0487 Protein 2e-24 41
O3I_005530 YP_006806043.1 winged helix family two component transcriptional regulator BAC0125 Protein 3e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
O3I_005530 YP_006806043.1 winged helix family two component transcriptional regulator VFG1389 Protein 6e-23 43
O3I_005530 YP_006806043.1 winged helix family two component transcriptional regulator VFG0473 Protein 1e-28 41