Gene Information

Name : lysS (AMBAS45_05665)
Accession : YP_006802092.1
Strain : Alteromonas macleodii Balearic Sea AD45
Genome accession: NC_018679
Putative virulence/resistance : Virulence
Product : lysyl-tRNA ligase
Function : -
COG functional category : -
COG ID : -
EC number : 6.1.1.6
Position : 1322980 - 1324548 bp
Length : 1569 bp
Strand : +
Note : COG1190 Lysyl-tRNA synthetase (class II)

DNA sequence :
ATGACTGACCAACAAACAGACGATAACAAATTGATTGCAGAGCGCCGTGCTAAGCTAAGCGCTATTCGCGAGCAGTGCCG
TGCAAACGGTTTCCCAAACAGCTTCCGTCGCGAAAACTATGCGGATGAGCTTCAAGCTAAGTTCGGTGAATTCGACAAAG
AAACGCTACAAGAGCAGGGTAACAAAGTAAGCATCGCTGGCCGTATTATGGCAAAGCGTGGTCCTTTCATGTTGCTTCAA
GATATGACTGGCCGCATTCAGGCATACGCAGATAAAGACACGCAGAAAGCGCTTAAAGCAAAATATGGCGCACTAGATAT
TGGCGACATTATTGGCGTGGCGGGTGACCTGCATAAGTCAGGTAAAGGCGACCTTTACGTGAACATGGAGCAATACGAGT
TGCTAACCAAAGCACTTCGTCCATTGCCAGAAAAATTCCACGGTTTGAGTGACCAAGAAACGAAATATCGCCAGCGCTAC
GTTGATTTGATCACAAGCGAACAAACCCGCAAAACCTTCATGATCCGTAGCAAGATCGTAAACGGTATTCGCAATTATCT
TACCGAACGTGACTACCTTGAAGTAGAAACGCCAATGCTTCAGGTTATTCCTGGTGGCGCGACAGCGAAGCCGTTTGTGA
CTCACCACAATGCGTTAGATATCGATATGTACCTGCGTATTGCACCAGAGCTTTACCTTAAGCGCCTAGTGGTTGGTGGT
TTTGAGCGTGTATTCGAAATTAACCGTAACTTCCGTAACGAAGGCTTATCAACCCGTCACAACCCAGAGTTTACTATGCT
TGAGTTCTACCAAGCGTATGCAGACTACAACGATCTAATGAACCTGACAGAAGATATGCTGCGCACGCTGGCAGAAGATA
TTCTTGGTACAAGCATTATCAAAAATACAACTAAAGACGCTGAGGGTAACGTAACGTCTGAAGTTGAATACGATTTTGGT
AAGCCGTTTGACCGCTTAAGCATGGGCGAAGCTATTCTTAAGTACTGGCCAGAAGCTAACGAGGAAGCTATCCGCGACCC
AGAGGCGAATCTTGACGCGCTTAAAGCAATGGCGAAACAGCTTCACATTAAAGAGCCTGAAGTTGACGGTATTTGGGGTG
CGGGTAAGTACCTTTGCGAAATCTTCGAAGCAACCGCGGAAGAGAAGCTTATTCAACCTACGTTTATTACAGAATATCCG
TGGGAAGTATCGCCGCTTGCGCGCCGTAACGACAACAACCCATTCATTACCGACCGCTTCGAGTTTTTTGTAGGTGGACG
TGAGTTAGCGAATGGCTTTAGCGAGCTTAACGACCCAGAAGATCAGGCGGAACGTTTTGCGAAGCAGGTTGAAGAGAAAG
ACGCTGGTGACGATGAAGCCATGCACTTTGACGACGATTACATTCGCGCGCTTGAATATGGTTTGCCGCCAACGGCGGGT
GAAGGTATCGGGATTGACCGTTTAGCTATGCTATTTACTGATAGCTCAACAATTAAAGATGTTATCTTGTTCCCACACAT
GAAGCCTCAGGCGCCAAAAGACGCGCAAGAAGCGGGTGAACAAGAATAA

Protein sequence :
MTDQQTDDNKLIAERRAKLSAIREQCRANGFPNSFRRENYADELQAKFGEFDKETLQEQGNKVSIAGRIMAKRGPFMLLQ
DMTGRIQAYADKDTQKALKAKYGALDIGDIIGVAGDLHKSGKGDLYVNMEQYELLTKALRPLPEKFHGLSDQETKYRQRY
VDLITSEQTRKTFMIRSKIVNGIRNYLTERDYLEVETPMLQVIPGGATAKPFVTHHNALDIDMYLRIAPELYLKRLVVGG
FERVFEINRNFRNEGLSTRHNPEFTMLEFYQAYADYNDLMNLTEDMLRTLAEDILGTSIIKNTTKDAEGNVTSEVEYDFG
KPFDRLSMGEAILKYWPEANEEAIRDPEANLDALKAMAKQLHIKEPEVDGIWGAGKYLCEIFEATAEEKLIQPTFITEYP
WEVSPLARRNDNNPFITDRFEFFVGGRELANGFSELNDPEDQAERFAKQVEEKDAGDDEAMHFDDDYIRALEYGLPPTAG
EGIGIDRLAMLFTDSSTIKDVILFPHMKPQAPKDAQEAGEQE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 1e-131 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lysS YP_006802092.1 lysyl-tRNA ligase VFG1668 Protein 8e-132 55