Gene Information

Name : AMEC673_16830 (AMEC673_16830)
Accession : YP_006800425.1
Strain : Alteromonas macleodii English Channel 673
Genome accession: NC_018678
Putative virulence/resistance : Virulence
Product : nucleotide sugar dehydrogenase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3952476 - 3953663 bp
Length : 1188 bp
Strand : -
Note : COG1004 Predicted UDP-glucose 6-dehydrogenase

DNA sequence :
ATGGATAGTACTATGCAGAAGCTCAAGATAGCTGTAGCAGGCACAGGTTATGTGGGGCTTTCAAATGCAGTGCTACTTGC
ACAACACAATGAAGTGAAAGCGGTCGACCTAGTACCAGAAAAAGTCGATATGCTTAACAATAAAAAGTCTCCAATCGAAG
ACAAAGAAATCTCTGAGTATTTAGCAACGAAAGAGCTTAACCTTGAAGCAACGTTAGACGCGCAAGTTGCTTATAAAGAT
GCTGACTATGTTGTAATTGCAACACCAACCGATTACGACCCACAGACCAACTACTTCAATACAGGTAGTGTAGAAGCAGT
AATCAAAACCGTGATGGAAATCAACCCTAATGCTGTGATGATTGTAAAATCGACCGTACCGGTAGGCTTTACTAAAGACG
CAAAAGCTCGTTTTGGCTCTGACAATATTATCTTTTCGCCTGAATTTTTGCGTGAAGGGAAAGCACTTTACGACAACCTT
TACCCGAGCCGTATTATCGTAGGCGAGCGTAGTGAGCGCGCGGACGTTTTCGCAAAACTGCTTCAGCAAGGTGCAATAAA
AGAGAACATCGATGTTTTATTCACCGACAGCACTGAAGCCGAAGCCATCAAACTTTTCGCCAACACTTACTTGGCAATGC
GTGTTGCGTACTTTAACGAACTAGATAGCTATGCAGAGCGTAATGGCTTAGACACTAAACAAATCATCGAAGGTGTCGGT
TTAGACCCTCGTATTGGTAATCACTACAACAACCCAAGTTTTGGTTACGGTGGTTATTGCTTACCAAAAGATACCAAACA
GTTACTAGCTAACTACAGTGAAGTACCTAACAATATGATTCAGGCCATTGTAGATGCTAACCGTACCCGTAAAGATTTTA
TCGCCGATTCAATTGTAAGCCGTAAGCCTAAAATTGTAGGCATTTATCGTCTTATCATGAAGTCTGGTTCTGATAACTTC
CGAGCAAGTGCTATTCAAGGCATCATGAAACGTATTAAGGCGAAAGGTATTGAAGTTGTAGTCTACGAGCCGGTACTTAA
GGAAGAGGAGTTCTTCCGTTCTCGTGTGGTAAATGACTTAGACGAATTTAAGAAAATCTCTGACGTAATCGTAGCAAACC
GTGTTACGGGCGATATCGAAGATGTACTAGATAAAGTATACAGCCGCGACTTGTTCAACGCTGATTAA

Protein sequence :
MDSTMQKLKIAVAGTGYVGLSNAVLLAQHNEVKAVDLVPEKVDMLNNKKSPIEDKEISEYLATKELNLEATLDAQVAYKD
ADYVVIATPTDYDPQTNYFNTGSVEAVIKTVMEINPNAVMIVKSTVPVGFTKDAKARFGSDNIIFSPEFLREGKALYDNL
YPSRIIVGERSERADVFAKLLQQGAIKENIDVLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAERNGLDTKQIIEGVG
LDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYSEVPNNMIQAIVDANRTRKDFIADSIVSRKPKIVGIYRLIMKSGSDNF
RASAIQGIMKRIKAKGIEVVVYEPVLKEEEFFRSRVVNDLDEFKKISDVIVANRVTGDIEDVLDKVYSRDLFNAD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0068 YP_300158.1 UDP-glucose 6-dehydrogenase Not tested SCC15305cap Protein 2e-95 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AMEC673_16830 YP_006800425.1 nucleotide sugar dehydrogenase VFG0963 Protein 2e-104 56