Gene Information

Name : C270_04375 (C270_04375)
Accession : YP_006795785.1
Strain : Leuconostoc carnosum JB16
Genome accession: NC_018673
Putative virulence/resistance : Resistance
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 908346 - 909020 bp
Length : 675 bp
Strand : -
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGTCAAATCTTAGGTTTTCATCTGTTACTAAAATATTTGGTCATGATACCAGCAAATATGTTGCGCTTGATCAAGTTAA
TTTTGAGGCAGAAAATGGGCAACTTGTTGTCGTTATTGGACCATCTGGTTCTGGGAAAACGACCTTTTTAACAATTGCCG
GAGGCTTGCAATCACCAACTTCTGGTAACGTGACGATCAGTGGTAATAATATGACAAGTCTCGCCAAGAAAGAACAAACA
AAGTTGCGTTTGGATAAGATTGGTTTTGTTTTGCAATCATACAATTTAGTACCATTTTTAACTGTGAAAGAACAATTTGA
GCTAGTAACTAAAGTCAAGAAAAATAATCTTTCCGATCAATCATTGCATCAATTACTTGATGATCTTGATATTCGTTCTC
TAGTCAATAAGTATCCAAATGAACTATCAGGTGGGCAAAAGCAACGTGTGGCAATAGCACGCGCTTTGTTTACTGACCCT
GAATATATTCTTGCAGATGAACCAACAGCAGCTTTGGATACCGAACGTTCTATGGCAGTTATGTCATTATTAAAAGATTT
AGCACATAAACATGATAAAATGATTATAGTTGTAACACATGACATGCGCTTAAAAGAATTAGCTGATAAAGTCTATCAAA
TTATTGATGGTAAAATGTCAGTGTATGAGGGTTAA

Protein sequence : 
MSNLRFSSVTKIFGHDTSKYVALDQVNFEAENGQLVVVIGPSGSGKTTFLTIAGGLQSPTSGNVTISGNNMTSLAKKEQT
KLRLDKIGFVLQSYNLVPFLTVKEQFELVTKVKKNNLSDQSLHQLLDDLDIRSLVNKYPNELSGGQKQRVAIARALFTDP
EYILADEPTAALDTERSMAVMSLLKDLAHKHDKMIIVVTHDMRLKELADKVYQIIDGKMSVYEG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 3e-46 50
SARLGA251_00480 YP_005754062.1 ABC-type transport system ATPase Not tested Type-XI SCCmec Protein 1e-40 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
C270_04375 YP_006795785.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686878. Protein 5e-26 43
C270_04375 YP_006795785.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene598.p Protein 5e-33 42