Gene Information

Name : C270_06815 (C270_06815)
Accession : YP_006796271.1
Strain : Leuconostoc carnosum JB16
Genome accession: NC_018673
Putative virulence/resistance : Virulence
Product : Mn/Zn ABC transporter ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1426653 - 1427396 bp
Length : 744 bp
Strand : -
Note : COG1121 ABC-type Mn/Zn transport systems, ATPase component

DNA sequence : 
ATGATAAATATCCGAGATATGACGGTTACCTATGGTGGTAATCCGATCTTTACGAATCTGTCCATTCAGTTTGAACCAGG
TAAAATTACGGGTATTATTGGCCCTAATGGGGCTGGTAAGTCAACAATGATTAAGGCGATGTTAGGCTTAATCAGTAAAC
AGACTGGAGAAGTCACACTTGATGATAATCCAGTGACTAAACAATTAAAGAGAGTTGCGTATGTTGAACAACGTGCAGCG
CTTGACTTGAGTTTTCCAATTAATGTATTTGACACTGTCATGACAGGGACTTACCCTAATTTAGGGCTATTTCGTGTGCC
AGGTGCAAAGGAAAATGAAGCGGTAACAAAAGCGTTATCCGATGTTAAACTTTCAGAATTTACTAAGCGACAAATTGGTG
CACTGTCTGGTGGACAATTACAACGCGTTTTCGTAGCACGTGCTATTGTGCAAAATGCCGATGTCATCATCTTAGATGAG
CCATTTGTTGGTATTGACATGAAATCTGAAGTTGAAATTATAGCAATATTGAAGCATTGGCAAGCAGCAGGAAAAACAAT
TATTGTTGTGCACCATGATTTAAATAAGGTTACGACGTATTTTGATAATCTTGTGATTATCAAACGTGGGATTGTTGCTG
CCGGTCCAACAGCTGATGTTTTTACAAAAGAAAACATCGCAAATGCTTTCAGTGGTGACTTGTCAACGATATTATTCGCA
GATAAGGAGTCAGAAAATGCATAG

Protein sequence : 
MINIRDMTVTYGGNPIFTNLSIQFEPGKITGIIGPNGAGKSTMIKAMLGLISKQTGEVTLDDNPVTKQLKRVAYVEQRAA
LDLSFPINVFDTVMTGTYPNLGLFRVPGAKENEAVTKALSDVKLSEFTKRQIGALSGGQLQRVFVARAIVQNADVIILDE
PFVGIDMKSEVEIIAILKHWQAAGKTIIVVHHDLNKVTTYFDNLVIIKRGIVAAGPTADVFTKENIANAFSGDLSTILFA
DKESENA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 4e-51 45
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 3e-51 45
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 8e-46 43
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-46 43
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 6e-46 43
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 9e-45 42
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 9e-45 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
C270_06815 YP_006796271.1 Mn/Zn ABC transporter ATPase BAC0400 Protein 7e-51 43
C270_06815 YP_006796271.1 Mn/Zn ABC transporter ATPase BAC0350 Protein 4e-46 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
C270_06815 YP_006796271.1 Mn/Zn ABC transporter ATPase VFG0526 Protein 3e-46 43