Gene Information

Name : C270_06810 (C270_06810)
Accession : YP_006796270.1
Strain : Leuconostoc carnosum JB16
Genome accession: NC_018673
Putative virulence/resistance : Virulence
Product : Mn2+/Zn2+ ABC transporter permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1425815 - 1426660 bp
Length : 846 bp
Strand : -
Note : COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components

DNA sequence : 
ATGCATAGTATTGAATTATTTATTGATGGTTTAATGAAATATAACTTCCTACAAACAGCTTTAATTACTTCTATTTTAGT
AGGTATTATGTCAGGCATAATTGGTTCTTTTATTATTTTAAGAGGCATGTCATTAATGGGGGATGCTATCTCTCACGCAG
TGCTACCAGGTGTTGCTGTCGCCTACATGTTGGGAATTAACCTACTTGTTGGTGCATCGATTTTTGGAATTTTAGCTGCT
TTACTAATTGGTGTTGTGACAATGAAGTCAAAGCTAAAAAATGATACGGCAATTGGAATTGTTTTCTCGGCGTTTTTTGC
TCTAGGATTTATTTTAATTTCATTAGCAGAATCCGCCACGAATTTACATCATATTTTGTTTGGTAATGTGCTGGCTGTTT
CTGACAGTGATTTGGTTACAACGGCTGTTGTCTTGGCTATCATTTTATTGTTTGTTGTCATCTTTTACAAAGAATTGCTC
ATTACCTCGTTTGATAATACTTTTGCCAAAGCATATGGTTTGAAAACACAAGTGTTGCATTATGCATTGATGTTGATGTT
GACACTAGTTACAGTAACGGCTTTACAGACAGTTGGAATTATTTTGATTGTTGCCATGTTGATTACGCCAGCAGCAACAG
CGTTTTTGTTAACAAATCGGTTGTCACACATGATGGTTTTGGCAGCAACATTCTCTGTTATTTCATCAGTTATTGGCTTG
TATTTCAGTTTCACGTTTAACTGGGCTTCAGGACCAGCAATTGTACTTACAGCAGCGATGTTCTTCCTAGTGACATTTAT
TTTTTCACCAAAGCAAGGCATTATATTTAAACAAAAAGAGAATTAA

Protein sequence : 
MHSIELFIDGLMKYNFLQTALITSILVGIMSGIIGSFIILRGMSLMGDAISHAVLPGVAVAYMLGINLLVGASIFGILAA
LLIGVVTMKSKLKNDTAIGIVFSAFFALGFILISLAESATNLHHILFGNVLAVSDSDLVTTAVVLAIILLFVVIFYKELL
ITSFDNTFAKAYGLKTQVLHYALMLMLTLVTVTALQTVGIILIVAMLITPAATAFLLTNRLSHMMVLAATFSVISSVIGL
YFSFTFNWASGPAIVLTAAMFFLVTFIFSPKQGIIFKQKEN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 3e-50 58
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 2e-50 58
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-35 41
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-35 41
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 8e-36 41
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-35 41
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
C270_06810 YP_006796270.1 Mn2+/Zn2+ ABC transporter permease BAC0352 Protein 5e-36 41
C270_06810 YP_006796270.1 Mn2+/Zn2+ ABC transporter permease BAC0442 Protein 2e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
C270_06810 YP_006796270.1 Mn2+/Zn2+ ABC transporter permease VFG0528 Protein 4e-36 41