Gene Information

Name : C270_06020 (C270_06020)
Accession : YP_006796112.1
Strain : Leuconostoc carnosum JB16
Genome accession: NC_018673
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1267822 - 1268511 bp
Length : 690 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGAGTAAAGTATTGATTGTTGAAGATGAAGAAAACTTGGCAAAGTTTGTCGGGTTGGAGTTAAAACATGAAGGATATGA
AGTAGAGACGGTTTTGGATGGTCGTTCAGGGTTAGATTTAGCTTTAGAGAATGATTATGATGTTATTTTGCTTGATTTAA
TGTTACCAGAATTAAATGGTTTAGAAGTTGCGCGTCGCTTACGTGAAGTAAAAAAGACGCCAATTATTATGATGACTGCG
CGCGATTCTGTTATTGATCGTGTCTCCGGGCTGGATTATGGTGCAGATGACTACTTGGTGAAGCCTTTTGCCATTGAAGA
GCTACTAGCACGTATTCGCTCATTATTGCGCCGTATTGCCATTGAAACAGAATCTAATGACAAGCACCGTGCTATTATTA
ATTTTAAAGATTTACGTATTGAAAAAGAAAATCGTATTGCACGACGCGGTGATCAAATTATTAATTTGACTAAGCGTGAA
TATGATTTATTATTAACATTGGTGGAAAATATCAATGTTGTCCAATCACGTGAGCAACTGCTGAAAGAGGTCTGGGGATT
TGATTCAGAAGTAGAGACTAACGTTGTTGACGTTTATATTCGATACTTACGTAATAAAATTGATGATCCAGAAAGCAAGG
CGTCATACATTCAGACTGTTCGCGGTACTGGATATGTCATGCGTAGTTAA

Protein sequence : 
MSKVLIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDLALENDYDVILLDLMLPELNGLEVARRLREVKKTPIIMMTA
RDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAIETESNDKHRAIINFKDLRIEKENRIARRGDQIINLTKRE
YDLLLTLVENINVVQSREQLLKEVWGFDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-32 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-32 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
C270_06020 YP_006796112.1 DNA-binding response regulator HE999704.1.gene1528. Protein 6e-67 67
C270_06020 YP_006796112.1 DNA-binding response regulator NC_002951.3238224.p0 Protein 1e-48 56
C270_06020 YP_006796112.1 DNA-binding response regulator NC_007793.3914065.p0 Protein 1e-48 56
C270_06020 YP_006796112.1 DNA-binding response regulator NC_002758.1121390.p0 Protein 1e-48 56
C270_06020 YP_006796112.1 DNA-binding response regulator NC_010079.5776364.p0 Protein 1e-48 56
C270_06020 YP_006796112.1 DNA-binding response regulator NC_002952.2859858.p0 Protein 1e-48 56
C270_06020 YP_006796112.1 DNA-binding response regulator NC_007622.3794948.p0 Protein 1e-48 56
C270_06020 YP_006796112.1 DNA-binding response regulator NC_003923.1003417.p0 Protein 1e-48 56
C270_06020 YP_006796112.1 DNA-binding response regulator NC_013450.8614146.p0 Protein 1e-48 56
C270_06020 YP_006796112.1 DNA-binding response regulator AE015929.1.gene1106. Protein 6e-44 54
C270_06020 YP_006796112.1 DNA-binding response regulator BAC0125 Protein 3e-31 42
C270_06020 YP_006796112.1 DNA-binding response regulator NC_012469.1.7686381. Protein 2e-35 42
C270_06020 YP_006796112.1 DNA-binding response regulator NC_012469.1.7685629. Protein 1e-37 41
C270_06020 YP_006796112.1 DNA-binding response regulator AE016830.1.gene1681. Protein 2e-35 41
C270_06020 YP_006796112.1 DNA-binding response regulator HE999704.1.gene2815. Protein 2e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
C270_06020 YP_006796112.1 DNA-binding response regulator VFG1389 Protein 2e-31 45
C270_06020 YP_006796112.1 DNA-binding response regulator VFG1390 Protein 3e-34 44
C270_06020 YP_006796112.1 DNA-binding response regulator VFG0596 Protein 7e-33 43